FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3443, 248 aa
  1>>>pF1KB3443 248 - 248 aa - 248 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0042+/-0.000427; mu= 10.9280+/- 0.026
 mean_var=80.0548+/-15.908, 0's: 0 Z-trim(111.5): 3  B-trim: 118 in 1/53
 Lambda= 0.143344
 statistics sampled from 20134 (20136) to 20134 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.236), width:  16
 Scan time:  6.350

The best scores are:                                      opt bits E(85289)
NP_000962 (OMIM: 604166) 60S ribosomal protein L7  ( 248) 1619 344.5   1e-94
XP_006716526 (OMIM: 604166) PREDICTED: 60S ribosom ( 208) 1369 292.8 3.2e-79


>>NP_000962 (OMIM: 604166) 60S ribosomal protein L7 [Hom  (248 aa)
 initn: 1619 init1: 1619 opt: 1619  Z-score: 1821.5  bits: 344.5 E(85289): 1e-94
Smith-Waterman score: 1619; 100.0% identity (100.0% similar) in 248 aa overlap (1-248:1-248)

               10        20        30        40        50        60
pF1KB3 MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MEGVEEKKKEVPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YRQMYRTEIRMARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TFVKLNKASINMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 KYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQI
              190       200       210       220       230       240

               
pF1KB3 NRLIRRMN
       ::::::::
NP_000 NRLIRRMN
               

>>XP_006716526 (OMIM: 604166) PREDICTED: 60S ribosomal p  (208 aa)
 initn: 1369 init1: 1369 opt: 1369  Z-score: 1543.3  bits: 292.8 E(85289): 3.2e-79
Smith-Waterman score: 1369; 100.0% identity (100.0% similar) in 208 aa overlap (41-248:1-208)

               20        30        40        50        60        70
pF1KB3 VPAVPETLKKKRRNFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIR
                                     ::::::::::::::::::::::::::::::
XP_006                               MLRKARRKLIYEKAKHYHKEYRQMYRTEIR
                                             10        20        30

               80        90       100       110       120       130
pF1KB3 MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MARMARKAGNFYVPAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASI
               40        50        60        70        80        90

              140       150       160       170       180       190
pF1KB3 NMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NMLRIVEPYIAWGYPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDL
              100       110       120       130       140       150

              200       210       220       230       240        
pF1KB3 IHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 IHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN
              160       170       180       190       200        




248 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:03:26 2016 done: Sat Nov  5 05:03:27 2016
 Total Scan time:  6.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]