FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3446, 295 aa
  1>>>pF1KB3446 295 - 295 aa - 295 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6080+/-0.000838; mu= 14.7299+/- 0.051
 mean_var=77.5256+/-15.564, 0's: 0 Z-trim(107.6): 13  B-trim: 0 in 0/50
 Lambda= 0.145664
 statistics sampled from 9646 (9649) to 9646 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.296), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS2686.1 RPSA gene_id:3921|Hs108|chr3            ( 295) 1980 425.3 2.7e-119
CCDS77723.1 RPSA gene_id:3921|Hs108|chr3           ( 300) 1960 421.1  5e-118


>>CCDS2686.1 RPSA gene_id:3921|Hs108|chr3                 (295 aa)
 initn: 1980 init1: 1980 opt: 1980  Z-score: 2255.3  bits: 425.3 E(32554): 2.7e-119
Smith-Waterman score: 1980; 100.0% identity (100.0% similar) in 295 aa overlap (1-295:1-295)

               10        20        30        40        50        60
pF1KB3 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 AARAIVAIENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFTNQIQAAFREPR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 LLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPAPEFTA
              190       200       210       220       230       240

              250       260       270       280       290     
pF1KB3 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 TQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
              250       260       270       280       290     

>>CCDS77723.1 RPSA gene_id:3921|Hs108|chr3                (300 aa)
 initn: 1966 init1: 1451 opt: 1960  Z-score: 2232.5  bits: 421.1 E(32554): 5e-118
Smith-Waterman score: 1960; 98.3% identity (98.3% similar) in 300 aa overlap (1-295:1-300)

               10        20        30        40        50        60
pF1KB3 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MSGALDVLQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLL
               10        20        30        40        50        60

               70        80             90       100       110     
pF1KB3 AARAIVAIENPADVSVISSRNTGQ-----RAVLKFAAATGATPIAGRFTPGTFTNQIQAA
       ::::::::::::::::::::::::     :::::::::::::::::::::::::::::::
CCDS77 AARAIVAIENPADVSVISSRNTGQVCGTVRAVLKFAAATGATPIAGRFTPGTFTNQIQAA
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB3 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FREPRLLVVTDPRADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMW
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB3 WMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 WMLAREVLRMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEKAVTKEEFQGEWTAPA
              190       200       210       220       230       240

         240       250       260       270       280       290     
pF1KB3 PEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PEFTATQPEVADWSEGVQVPSVPIQQFPTEDWSAQPATEDWSAAPTAQATEWVGATTDWS
              250       260       270       280       290       300




295 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:26:04 2016 done: Fri Nov  4 02:26:05 2016
 Total Scan time:  2.490 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]