FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3448, 296 aa 1>>>pF1KB3448 296 - 296 aa - 296 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3998+/-0.00106; mu= 10.2655+/- 0.064 mean_var=85.9066+/-16.668, 0's: 0 Z-trim(104.8): 26 B-trim: 0 in 0/50 Lambda= 0.138376 statistics sampled from 8108 (8109) to 8108 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.614), E-opt: 0.2 (0.249), width: 16 Scan time: 2.050 The best scores are: opt bits E(32554) CCDS741.1 RPL5 gene_id:6125|Hs108|chr1 ( 297) 1946 398.4 3.3e-111 >>CCDS741.1 RPL5 gene_id:6125|Hs108|chr1 (297 aa) initn: 1599 init1: 1578 opt: 1946 Z-score: 2110.0 bits: 398.4 E(32554): 3.3e-111 Smith-Waterman score: 1946; 99.7% identity (99.7% similar) in 297 aa overlap (1-296:1-297) 10 20 30 40 50 60 pF1KB3 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB3 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF 130 140 150 160 170 180 190 200 210 220 230 pF1KB3 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDM-EEMY ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: CCDS74 PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 190 200 210 220 230 240 240 250 260 270 280 290 pF1KB3 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS74 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES 250 260 270 280 290 296 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 02:27:07 2016 done: Fri Nov 4 02:27:07 2016 Total Scan time: 2.050 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]