FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3450, 293 aa
  1>>>pF1KB3450 293 - 293 aa - 293 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2746+/-0.00042; mu= 13.6081+/- 0.026
 mean_var=176.1107+/-35.824, 0's: 0 Z-trim(117.8): 73  B-trim: 850 in 1/50
 Lambda= 0.096645
 statistics sampled from 30081 (30160) to 30081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.354), width:  16
 Scan time:  7.740

The best scores are:                                      opt bits E(85289)
NP_002943 (OMIM: 603624) 40S ribosomal protein S2  ( 293) 1970 286.5 4.1e-77


>>NP_002943 (OMIM: 603624) 40S ribosomal protein S2 [Hom  (293 aa)
 initn: 1970 init1: 1970 opt: 1970  Z-score: 1505.5  bits: 286.5 E(85289): 4.1e-77
Smith-Waterman score: 1970; 100.0% identity (100.0% similar) in 293 aa overlap (1-293:1-293)

               10        20        30        40        50        60
pF1KB3 MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MADDAGAAGGPGGPGGPGMGNRGGFRGGFGSGIRGRGRGRGRGRGRGRGARGGKAEDKEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKAT
              190       200       210       220       230       240

              250       260       270       280       290   
pF1KB3 FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT
              250       260       270       280       290   




293 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:05:45 2016 done: Sat Nov  5 05:05:46 2016
 Total Scan time:  7.740 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]