FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3452, 217 aa
  1>>>pF1KB3452 217 - 217 aa - 217 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8139+/-0.000881; mu= 10.7670+/- 0.053
 mean_var=63.9848+/-12.256, 0's: 0 Z-trim(105.5): 15  B-trim: 0 in 0/53
 Lambda= 0.160338
 statistics sampled from 8437 (8439) to 8437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.656), E-opt: 0.2 (0.259), width:  16
 Scan time:  1.910

The best scores are:                                      opt bits E(32554)
CCDS4806.1 RPL10A gene_id:4736|Hs108|chr6          ( 217) 1400 332.4 1.3e-91


>>CCDS4806.1 RPL10A gene_id:4736|Hs108|chr6               (217 aa)
 initn: 1400 init1: 1400 opt: 1400  Z-score: 1758.2  bits: 332.4 E(32554): 1.3e-91
Smith-Waterman score: 1400; 100.0% identity (100.0% similar) in 217 aa overlap (1-217:1-217)

               10        20        30        40        50        60
pF1KB3 MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MSSKVSRDTLYEAVREVLHGNQRKRRKFLETVELQISLKNYDPQKDKRFSGTVRLKSTPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PKFSVCVLGDQQHCDEAKAVDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASESLIKQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 PRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKVLCLAVAVGHVKMTDDELV
              130       140       150       160       170       180

              190       200       210       
pF1KB3 YNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
       :::::::::::::::::::::::::::::::::::::
CCDS48 YNIHLAVNFLVSLLKKNWQNVRALYIKSTMGKPQRLY
              190       200       210       




217 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:06:26 2016 done: Sat Nov  5 05:06:27 2016
 Total Scan time:  1.910 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]