Result of FASTA (ccds) for
pF1KB3473
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3473, 497 aa
1>>>pF1KB3473 497 - 497 aa - 497 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.0710+/-0.00106; mu= -10.8146+/- 0.064
mean_var=385.3125+/-76.786, 0's: 0 Z-trim(116.1): 33 B-trim: 0 in 0/54
Lambda= 0.065338
statistics sampled from 16690 (16712) to 16690 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.513), width: 16
Scan time: 4.010
The best scores are: opt bits E(32554)
CCDS53978.1 MEF2A gene_id:4205|Hs108|chr15 ( 497) 3341 328.6 9.7e-90
CCDS81920.1 MEF2A gene_id:4205|Hs108|chr15 ( 505) 3315 326.2 5.4e-89
CCDS45362.1 MEF2A gene_id:4205|Hs108|chr15 ( 499) 3129 308.6 1e-83
CCDS58401.1 MEF2A gene_id:4205|Hs108|chr15 ( 429) 2790 276.6 3.7e-74
CCDS45363.1 MEF2A gene_id:4205|Hs108|chr15 ( 437) 2764 274.2 2.1e-73
CCDS60304.1 MEF2D gene_id:4209|Hs108|chr1 ( 514) 1506 155.6 1.2e-37
CCDS1143.1 MEF2D gene_id:4209|Hs108|chr1 ( 521) 1492 154.3 3e-37
CCDS54878.1 MEF2C gene_id:4208|Hs108|chr5 ( 483) 1286 134.9 2e-31
CCDS47245.1 MEF2C gene_id:4208|Hs108|chr5 ( 473) 1255 131.9 1.5e-30
CCDS78034.1 MEF2C gene_id:4208|Hs108|chr5 ( 465) 955 103.7 4.7e-22
CCDS47244.1 MEF2C gene_id:4208|Hs108|chr5 ( 463) 858 94.5 2.6e-19
CCDS46024.1 MEF2B gene_id:100271849|Hs108|chr19 ( 368) 658 75.6 1e-13
CCDS12394.1 MEF2B gene_id:4207|Hs108|chr19 ( 365) 640 73.9 3.4e-13
CCDS78030.1 MEF2C gene_id:4208|Hs108|chr5 ( 393) 593 69.5 7.7e-12
CCDS54877.1 MEF2C gene_id:4208|Hs108|chr5 ( 417) 587 68.9 1.2e-11
>>CCDS53978.1 MEF2A gene_id:4205|Hs108|chr15 (497 aa)
initn: 3341 init1: 3341 opt: 3341 Z-score: 1724.6 bits: 328.6 E(32554): 9.7e-90
Smith-Waterman score: 3341; 100.0% identity (100.0% similar) in 497 aa overlap (1-497:1-497)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQPL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQQH
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTE
430 440 450 460 470 480
490
pF1KB3 DRESPSVKRMRMDAWVT
:::::::::::::::::
CCDS53 DRESPSVKRMRMDAWVT
490
>>CCDS81920.1 MEF2A gene_id:4205|Hs108|chr15 (505 aa)
initn: 2401 init1: 1908 opt: 3315 Z-score: 1711.2 bits: 326.2 E(32554): 5.4e-89
Smith-Waterman score: 3315; 98.4% identity (98.4% similar) in 505 aa overlap (1-497:1-505)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 PQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIGAT
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPL--------NTQRIS
:::::::::::::::::::::::::::::::::::::::::::::: ::::::
CCDS81 GANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELNTQRIS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 SSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 SSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 QVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 QQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIV
430 440 450 460 470 480
480 490
pF1KB3 LGRPPNTEDRESPSVKRMRMDAWVT
:::::::::::::::::::::::::
CCDS81 LGRPPNTEDRESPSVKRMRMDAWVT
490 500
>>CCDS45362.1 MEF2A gene_id:4205|Hs108|chr15 (499 aa)
initn: 3131 init1: 2480 opt: 3129 Z-score: 1616.5 bits: 308.6 E(32554): 1e-83
Smith-Waterman score: 3129; 93.8% identity (96.8% similar) in 499 aa overlap (1-497:1-499)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNE
::::::::::::::::::::::::::.: :: ::.::: : . .: .:....:.::
CCDS45 DMDKVLLKYTEYNEPHESRTNSDIVEALNKKEHRGCDSPDPDTSYVLTPHTEEKYKKINE
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 DSDFIFK--RGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSML
. : ... . ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EFDNMMRNHKIAPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSML
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 SPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLIG
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 ATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQATQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 PLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVSAWQ
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 QHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 QQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPN
430 440 450 460 470 480
480 490
pF1KB3 TEDRESPSVKRMRMDAWVT
:::::::::::::::::::
CCDS45 TEDRESPSVKRMRMDAWVT
490
>>CCDS58401.1 MEF2A gene_id:4205|Hs108|chr15 (429 aa)
initn: 2790 init1: 2790 opt: 2790 Z-score: 1444.8 bits: 276.6 E(32554): 3.7e-74
Smith-Waterman score: 2790; 99.8% identity (100.0% similar) in 412 aa overlap (86-497:18-429)
60 70 80 90 100 110
pF1KB3 QYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRF
.:::::::::::::::::::::::::::::
CCDS58 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRF
10 20 30 40
120 130 140 150 160 170
pF1KB3 SKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDS
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB3 SMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 SMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPN
110 120 130 140 150 160
240 250 260 270 280 290
pF1KB3 LIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQ
170 180 190 200 210 220
300 310 320 330 340 350
pF1KB3 ATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 ATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVS
230 240 250 260 270 280
360 370 380 390 400 410
pF1KB3 AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 AWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQ
290 300 310 320 330 340
420 430 440 450 460 470
pF1KB3 QQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 QQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGR
350 360 370 380 390 400
480 490
pF1KB3 PPNTEDRESPSVKRMRMDAWVT
::::::::::::::::::::::
CCDS58 PPNTEDRESPSVKRMRMDAWVT
410 420
>>CCDS45363.1 MEF2A gene_id:4205|Hs108|chr15 (437 aa)
initn: 1759 init1: 1460 opt: 2764 Z-score: 1431.4 bits: 274.2 E(32554): 2.1e-73
Smith-Waterman score: 2764; 97.9% identity (98.1% similar) in 420 aa overlap (86-497:18-437)
60 70 80 90 100 110
pF1KB3 QYASTDMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRF
.:::::::::::::::::::::::::::::
CCDS45 MGRKKIQITRIMDERNRQTLRKKGLNGCESPDADDYFEHSPLSEDRF
10 20 30 40
120 130 140 150 160 170
pF1KB3 SKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SKLNEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDS
50 60 70 80 90 100
180 190 200 210 220 230
pF1KB3 SMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPN
110 120 130 140 150 160
240 250 260 270 280
pF1KB3 LIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPL--------N
::::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS45 LIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLSEEEELELN
170 180 190 200 210 220
290 300 310 320 330 340
pF1KB3 TQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPG
230 240 250 260 270 280
350 360 370 380 390 400
pF1KB3 MLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPS
290 300 310 320 330 340
410 420 430 440 450 460
pF1KB3 GFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDF
350 360 370 380 390 400
470 480 490
pF1KB3 HSPIVLGRPPNTEDRESPSVKRMRMDAWVT
::::::::::::::::::::::::::::::
CCDS45 HSPIVLGRPPNTEDRESPSVKRMRMDAWVT
410 420 430
>>CCDS60304.1 MEF2D gene_id:4209|Hs108|chr1 (514 aa)
initn: 1292 init1: 791 opt: 1506 Z-score: 789.5 bits: 155.6 E(32554): 1.2e-37
Smith-Waterman score: 1684; 54.4% identity (73.0% similar) in 540 aa overlap (1-495:1-511)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
:::::::: :: ::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS60 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESP--DADDYFEHSPLSEDRFSKL
:::::::::::::::::::::.::.:::::::.:::.:: :..: .:.::: ::.. .
CCDS60 DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 NEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSML
.:. : .:.: .: ::.: :::::.. ..:...::..:::.:::..:: ::: .:
CCDS60 SEELDGLFRRYGSTVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSS-LTDPRLL
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 SPPQTTLHRN-VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLI
:: : .:.:: :::: :::: : ::.::. ::. ::: ::::::.:..::::.:.
CCDS60 SPQQPALQRNSVSPGLPQRPAS---AGAMLGG-DLNSANGACPSPVGNGYVSARASPGLL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB3 GATGANSLGKVMPTKSPPPPGGGN-LGMNSRKPDLRVVIPPSSKGMMPPLNT-QRISSSQ
....:::.::.:.:::::: .. :: ::::::::. ..::.: ::. ::.. ::
CCDS60 PVANGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAGKGLMHHLNNAQRLGVSQ
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 ATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQVS
.:. :.::::::.:::: ::: .:.:::::::::.::::.::.: .:.::: ::::.:.
CCDS60 STHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGGLSLGNVT
300 310 320 330 340 350
360 370
pF1KB3 AWQQ--------------------------------------HHLGQAALSSLVAGGQLS
:::: :: ..::.:. :. :
CCDS60 AWQQPQQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNLIPGSPLP
360 370 380 390 400 410
380 390 400 410 420 430
pF1KB3 Q-GSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQP
. :. :...:. .:::::::.:: :.: .:. :::: : .:.:
CCDS60 HVGAALTVTTHPHISIKSEPVSPSRER-SPA--------------PPPPAVFPAA-RPEP
420 430 440 450
440 450 460 470 480 490
pF1KB3 RQEMGRSPVDSLSS-SSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRMDAW
: :.::: ...::. .::.: :::: . : :: . :. .:::::.:.:
CCDS60 ----G----DGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVKRMRLDTW
460 470 480 490 500 510
pF1KB3 VT
CCDS60 TLK
>>CCDS1143.1 MEF2D gene_id:4209|Hs108|chr1 (521 aa)
initn: 1894 init1: 620 opt: 1492 Z-score: 782.3 bits: 154.3 E(32554): 3e-37
Smith-Waterman score: 1670; 53.7% identity (72.0% similar) in 547 aa overlap (1-495:1-518)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
:::::::: :: ::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS11 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESP--DADDYFEHSPLSEDRFSKL
:::::::::::::::::::::.::.:::::::.:::.:: :..: .:.::: ::.. .
CCDS11 DMDKVLLKYTEYNEPHESRTNADIIETLRKKGFNGCDSPEPDGEDSLEQSPLLEDKYRRA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 NEDSDFIFKRGPPGLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSML
.:. : .:.: .: ::.: :::::.. ..:...::..:::.:::..:: ::: .:
CCDS11 SEELDGLFRRYGSTVPAPNFAMPVTVPVSNQSSLQFSNPSGSLVTPSLVTSS-LTDPRLL
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 SPPQTTLHRN-VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNLI
:: : .:.:: :::: :::: : ::.::. ::. ::: ::::::.:..::::.:.
CCDS11 SPQQPALQRNSVSPGLPQRPAS---AGAMLGG-DLNSANGACPSPVGNGYVSARASPGLL
180 190 200 210 220 230
240 250 260 270 280
pF1KB3 GATGANSLGKVMPTKSPPPPGGGN-LGMNSRKPDLRVVIPPSSKGMMPPL--------NT
....:::.::.:.:::::: .. :: ::::::::. ..::.: : :.
CCDS11 PVANGNSLNKVIPAKSPPPPTHSTQLGAPSRKPDLRVITSQAGKGLMHHLTEDHLDLNNA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB3 QRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQGFNSPGM
::.. ::.:. :.::::::.:::: ::: .:.:::::::::.::::.::.: .:.:::
CCDS11 QRLGVSQSTHSLTTPVVSVATPSLLSQGLPFSSMPTAYNTDYQLTSAELSSLPAFSSPGG
300 310 320 330 340 350
350 360 370
pF1KB3 LSLGQVSAWQQ--------------------------------------HHLGQAALSSL
::::.:.:::: :: ..::.:
CCDS11 LSLGNVTAWQQPQQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQQPPQQQSHLVPVSLSNL
360 370 380 390 400 410
380 390 400 410 420
pF1KB3 VAGGQLSQ-GSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQP
. :. : . :. :...:. .:::::::.:: :.: .:. :::: :
CCDS11 IPGSPLPHVGAALTVTTHPHISIKSEPVSPSRER-SPA--------------PPPPAVFP
420 430 440 450 460
430 440 450 460 470 480
pF1KB3 QPPQPQPRQEMGRSPVDSLSS-SSSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVK
.:.: : :.::: ...::. .::.: :::: . : :: . :. .::
CCDS11 AA-RPEP----G----DGLSSPAGGSYETGDRDDGRGDFGPTLGLLRPAPEPEAEGSAVK
470 480 490 500 510
490
pF1KB3 RMRMDAWVT
:::.:.:
CCDS11 RMRLDTWTLK
520
>>CCDS54878.1 MEF2C gene_id:4208|Hs108|chr5 (483 aa)
initn: 1668 init1: 652 opt: 1286 Z-score: 677.8 bits: 134.9 E(32554): 2e-31
Smith-Waterman score: 1740; 58.1% identity (75.7% similar) in 527 aa overlap (1-497:1-483)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS54 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST
10 20 30 40 50 60
70 80 90 100
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPD--ADDY--------------
::::::::::::::::::::::::::::::::::::.::: :::
CCDS54 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSALNKKENKGCESPD
70 80 90 100 110 120
110 120 130 140 150
pF1KB3 ----FEHSPLSEDRFSKLNEDSDFIFKRGP-PGLPPQNFSMSVTVPVTSPNALSYTNPGS
. .: .:....:.::. : ..: :..:: :: : :..::.: :.: :.:: :
CCDS54 PDSSYALTPRTEEKYKKINEEFDNMIKSHKIPAVPPPNFEMPVSIPVSSHNSLVYSNPVS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 SLVSPSLAASSTLTDSSMLSPPQTTLHRN-VSPGAPQRPPSTGNAGGMLSTTDLTVPNGA
:: .:.: :. : .:.:: .:::. .::::.::.::... ::: .::
CCDS54 SLGNPNLLP---------LAHP--SLQRNSMSPGVTHRPPSAGNTGGLMGG-DLT--SGA
190 200 210 220
220 230 240 250 260 270
pF1KB3 GSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPS
:.: .:::. : : ::.:. . : .:.: : .::::: :::::.:::::::.:::.
CCDS54 GTS-AGNGYGNPRNSPGLLVSPG--NLNKNMQAKSPPP---MNLGMNNRKPDLRVLIPPG
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB3 SKGMMPPLNTQRISSSQATQPLATPVVSVTTPSLPPQGL--VYSAMPTAYNTDYSLTSAD
::. :: .: :::..::..: ::::::::.::.:: ::. ::. :.:.:.:::.:::
CCDS54 SKNTMPSVN-QRINNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSAD
290 300 310 320 330
340 350 360 370 380 390
pF1KB3 LSALQGFNSPGMLSLGQVSAWQQHHLGQ---AALSSLVA--GGQLSQGSNLSINTNQNIS
::.:.:::. . : ::.:..:::.:: . .:::.: : . .:::.::::. ..:...
CCDS54 LSSLSGFNTASALHLGSVTGWQQQHLHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLN
340 350 360 370 380 390
400 410 420 430 440 450
pF1KB3 IKSEPISPPRDRMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSS
:::::.:::::: : :. :: . :.: ::::::::::
CCDS54 IKSEPVSPPRDRTTT------------------PSRYPQ----HTRHEAGRSPVDSLSSC
400 410 420 430
460 470 480 490
pF1KB3 SSSYDGSDREDPRGDFHSPIVLGRPPNTEDRESPSVKRMRM-DAWVT
::::::::::: :..::::: : :: . ..::::::::::. ..:.:
CCDS54 SSSYDGSDREDHRNEFHSPIGLTRP-SPDERESPSVKRMRLSEGWAT
440 450 460 470 480
>>CCDS47245.1 MEF2C gene_id:4208|Hs108|chr5 (473 aa)
initn: 1417 init1: 652 opt: 1255 Z-score: 662.2 bits: 131.9 E(32554): 1.5e-30
Smith-Waterman score: 1782; 59.9% identity (77.5% similar) in 516 aa overlap (1-497:1-473)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS47 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPD--ADDYFEHSPLSEDRFSKL
::::::::::::::::::::::::::::::::::::.::: ::: ::: :::.. :.
CCDS47 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 NEDSDFIFKRGPP-GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSM
::: :....: ..:: :: : :..::.: :.: :.:: ::: .:.:
CCDS47 NEDIDLMISRQRLCAVPPPNFEMPVSIPVSSHNSLVYSNPVSSLGNPNLLP---------
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 LSPPQTTLHRN-VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNL
:. : .:.:: .:::. .::::.::.::... ::: .:::.: .:::. : : ::.:
CCDS47 LAHP--SLQRNSMSPGVTHRPPSAGNTGGLMGG-DLT--SGAGTS-AGNGYGNPRNSPGL
180 190 200 210 220
240 250 260 270 280
pF1KB3 IGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLN-------TQ
. . : .:.: : .::::: :::::.:::::::.:::.::. :: .. .:
CCDS47 LVSPG--NLNKNMQAKSPPP---MNLGMNNRKPDLRVLIPPGSKNTMPSVSEDVDLLLNQ
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB3 RISSSQATQPLATPVVSVTTPSLPPQGL--VYSAMPTAYNTDYSLTSADLSALQGFNSPG
::..::..: ::::::::.::.:: ::. ::. :.:.:.:::.:::::.:.:::. .
CCDS47 RINNSQSAQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTAS
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB3 MLSLGQVSAWQQHHLGQ---AALSSLVA--GGQLSQGSNLSINTNQNISIKSEPISPPRD
: ::.:..:::.:: . .:::.: : . .:::.::::. ..:...:::::.:::::
CCDS47 ALHLGSVTGWQQQHLHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRD
350 360 370 380 390 400
410 420 430 440 450 460
pF1KB3 RMTPSGFQQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDRED
: : :. :: . :.: :::::::::: :::::::::::
CCDS47 RTTT------------------PSRYPQ----HTRHEAGRSPVDSLSSCSSSYDGSDRED
410 420 430
470 480 490
pF1KB3 PRGDFHSPIVLGRPPNTEDRESPSVKRMRM-DAWVT
:..::::: : :: . ..::::::::::. ..:.:
CCDS47 HRNEFHSPIGLTRP-SPDERESPSVKRMRLSEGWAT
440 450 460 470
>>CCDS78034.1 MEF2C gene_id:4208|Hs108|chr5 (465 aa)
initn: 1668 init1: 652 opt: 955 Z-score: 509.5 bits: 103.7 E(32554): 4.7e-22
Smith-Waterman score: 1800; 60.9% identity (78.4% similar) in 509 aa overlap (1-497:1-465)
10 20 30 40 50 60
pF1KB3 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
CCDS78 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYAST
10 20 30 40 50 60
70 80 90 100 110
pF1KB3 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCESPD--ADDYFEHSPLSEDRFSKL
::::::::::::::::::::::::::::::::::::.::: ::: ::: :::.. :.
CCDS78 DMDKVLLKYTEYNEPHESRTNSDIVETLRKKGLNGCDSPDPDADDSVGHSPESEDKYRKI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 NEDSDFIFKRGPP-GLPPQNFSMSVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSM
::: :....: ..:: :: : :..::.: :.: :.:: ::: .:.:
CCDS78 NEDIDLMISRQRLCAVPPPNFEMPVSIPVSSHNSLVYSNPVSSLGNPNLLP---------
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 LSPPQTTLHRN-VSPGAPQRPPSTGNAGGMLSTTDLTVPNGAGSSPVGNGFVNSRASPNL
:. : .:.:: .:::. .::::.::.::... ::: .:::.: .:::. : : ::.:
CCDS78 LAHP--SLQRNSMSPGVTHRPPSAGNTGGLMGG-DLT--SGAGTS-AGNGYGNPRNSPGL
180 190 200 210 220
240 250 260 270 280 290
pF1KB3 IGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSKGMMPPLNTQRISSSQA
. . : .:.: : .::::: :::::.:::::::.:::.::. :: .: :::..::.
CCDS78 LVSPG--NLNKNMQAKSPPP---MNLGMNNRKPDLRVLIPPGSKNTMPSVN-QRINNSQS
230 240 250 260 270
300 310 320 330 340 350
pF1KB3 TQPLATPVVSVTTPSLPPQGL--VYSAMPTAYNTDYSLTSADLSALQGFNSPGMLSLGQV
.: ::::::::.::.:: ::. ::. :.:.:.:::.:::::.:.:::. . : ::.:
CCDS78 AQSLATPVVSVATPTLPGQGMGGYPSAISTTYGTEYSLSSADLSSLSGFNTASALHLGSV
280 290 300 310 320 330
360 370 380 390 400
pF1KB3 SAWQQHHLGQ---AALSSLVA--GGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGF
..:::.:: . .:::.: : . .:::.::::. ..:...:::::.:::::: :
CCDS78 TGWQQQHLHNMPPSALSQLGACTSTHLSQSSNLSLPSTQSLNIKSEPVSPPRDRTTT---
340 350 360 370 380 390
410 420 430 440 450 460
pF1KB3 QQQQQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHS
:. :: . :.: :::::::::: ::::::::::: :..:::
CCDS78 ---------------PSRYPQ----HTRHEAGRSPVDSLSSCSSSYDGSDREDHRNEFHS
400 410 420 430
470 480 490
pF1KB3 PIVLGRPPNTEDRESPSVKRMRM-DAWVT
:: : :: . ..::::::::::. ..:.:
CCDS78 PIGLTRP-SPDERESPSVKRMRLSEGWAT
440 450 460
497 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:21:22 2016 done: Thu Nov 3 13:21:23 2016
Total Scan time: 4.010 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]