FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3493, 630 aa
  1>>>pF1KB3493 630 - 630 aa - 630 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0920+/-0.00102; mu= 8.6242+/- 0.062
 mean_var=214.8704+/-45.452, 0's: 0 Z-trim(112.6): 133  B-trim: 622 in 1/51
 Lambda= 0.087496
 statistics sampled from 13146 (13299) to 13146 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.409), width:  16
 Scan time:  2.710

The best scores are:                                      opt bits E(32554)
CCDS11591.1 TRIM25 gene_id:7706|Hs108|chr17        ( 630) 4285 553.9 2.3e-157


>>CCDS11591.1 TRIM25 gene_id:7706|Hs108|chr17             (630 aa)
 initn: 4285 init1: 4285 opt: 4285  Z-score: 2938.7  bits: 553.9 E(32554): 2.3e-157
Smith-Waterman score: 4285; 99.5% identity (99.7% similar) in 630 aa overlap (1-630:1-630)

               10        20        30        40        50        60
pF1KB3 MAELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAELCPLAEELSCSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRAVYQAR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 PQLHKNTVLCNVVEQFLQADLAREPPADGWTPPARASAPSPNAQVACDHCLKEAAVKTCL
       :::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::
CCDS11 PQLHKNTVLCNVVEQFLQADLAREPPADVWTPPARASAPSPNAQVACDHCLKEAAVKTCL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VCMASFCQEHLQPHFDSPAFQDHPLQPPVRDLLRRKCSQHNRLREFFCPEHSECICHICL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VEHKACSPASLSQASADLEATLRHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQ
       ::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VEHKTCSPASLSQASADLEATLRHKLTVMYSQINGASRALDDVRNRQQDVRMTANRKVEQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LQQEYTEMKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LQQEYTEMKALLDASETTSTRKIKEEEKRVNSKFDTIYQILLKKKSEIQTLKEEIEQSLT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 KRDEFEFLEKASKLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQELTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: ::
CCDS11 KRDEFEFLEKASKLRGISTKPVYIPEVELNHKLIKGIHQSTIDLKNELKQCIGRLQEPTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 SSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SSGDPGEHDPASTHKSTRPVKKVSKEEKKSKKPPPVPALPSKLPTFGAPEQLVDLKQAGL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 EAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EAAAKATSSHPNSTSLKAKVLETFLAKSRPELLEYYIKVILDYNTAHNKVALSECYTVAS
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 VAEMPQNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMNRQGPES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VAEMPQNYRPHPQRFTYCSQVLGLHCYKKGIHYWEVELQKNNFCGVGICYGSMNRQGPES
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 RLGRNSASWCVEWFNTKISAWHNNVEKTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RLGRNSASWCVEWFNTKISAWHNNVEKTLPSTKATRVGVLLNCDHGFVIFFAVADKVHLM
              550       560       570       580       590       600

              610       620       630
pF1KB3 YKFRVDFTEALYPAFWVFSAGATLSICSPK
       ::::::::::::::::::::::::::::::
CCDS11 YKFRVDFTEALYPAFWVFSAGATLSICSPK
              610       620       630




630 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:25:35 2016 done: Thu Nov  3 13:25:35 2016
 Total Scan time:  2.710 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]