Result of FASTA (ccds) for
pF1KB3502
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3502, 243 aa
1>>>pF1KB3502 243 - 243 aa - 243 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2979+/-0.000933; mu= 10.6409+/- 0.056
mean_var=95.5559+/-18.696, 0's: 0 Z-trim(107.4): 15 B-trim: 0 in 0/50
Lambda= 0.131204
statistics sampled from 9573 (9579) to 9573 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.294), width: 16
Scan time: 2.040
The best scores are: opt bits E(32554)
CCDS33498.1 VAPB gene_id:9217|Hs108|chr20 ( 243) 1570 307.1 7e-84
CCDS11848.2 VAPA gene_id:9218|Hs108|chr18 ( 249) 1014 201.8 3.5e-52
CCDS11847.2 VAPA gene_id:9218|Hs108|chr18 ( 294) 761 154.0 1e-37
CCDS56198.1 VAPB gene_id:9217|Hs108|chr20 ( 99) 467 98.1 2.4e-21
>>CCDS33498.1 VAPB gene_id:9217|Hs108|chr20 (243 aa)
initn: 1570 init1: 1570 opt: 1570 Z-score: 1619.4 bits: 307.1 E(32554): 7e-84
Smith-Waterman score: 1570; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)
10 20 30 40 50 60
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 CVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 QRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGK
190 200 210 220 230 240
pF1KB3 IAL
:::
CCDS33 IAL
>>CCDS11848.2 VAPA gene_id:9218|Hs108|chr18 (249 aa)
initn: 990 init1: 800 opt: 1014 Z-score: 1050.4 bits: 201.8 E(32554): 3.5e-52
Smith-Waterman score: 1014; 62.9% identity (85.3% similar) in 245 aa overlap (1-243:8-249)
10 20 30 40 50
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYC
::: ::.: :.: .:::.::::::::::::: ::.::.::::::::::::::
CCDS11 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 VRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPED
::::::::: :....:::::::::::::::::::::::..::: .:::::::::::::..
CCDS11 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 LMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEEC
:::::::::::.: :::: .:.: .: . .::: . :. : : ::.:::..:.::::
CCDS11 LMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEEC
130 140 150 160 170
180 190 200 210 220 230
pF1KB3 KRLQGEVQRLREENKQFKEEDGLRMRKTVQSNSPISALAPTGKEEGLST--RLLALVVLF
::::::...: :::.....: :::.::...:..: :. . . ... : ::.... .
CCDS11 KRLQGEMMKLSEENRHLRDE-GLRLRKVAHSDKPGSTSTASFRDNVTSPLPSLLVVIAAI
180 190 200 210 220 230
240
pF1KB3 FIVGVIIGKIAL
:: : ..::. :
CCDS11 FI-GFFLGKFIL
240
>>CCDS11847.2 VAPA gene_id:9218|Hs108|chr18 (294 aa)
initn: 982 init1: 756 opt: 761 Z-score: 790.5 bits: 154.0 E(32554): 1e-37
Smith-Waterman score: 897; 54.2% identity (73.5% similar) in 275 aa overlap (1-230:8-279)
10 20 30 40 50
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYC
::: ::.: :.: .:::.::::::::::::: ::.::.::::::::::::::
CCDS11 MASASGAMAKHEQILVLDPPTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYC
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 VRPNSGIIDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPED
::::::::: :....:::::::::::::::::::::::..::: .:::::::::::::..
CCDS11 VRPNSGIIDPGSTVTVSVMLQPFDYDPNEKSKHKFMVQTIFAPPNTSDMEAVWKEAKPDE
70 80 90 100 110 120
120 130
pF1KB3 LMDSKLRCVFELPAENDK----P-------------------------------------
:::::::::::.: :::: :
CCDS11 LMDSKLRCVFEMPNENDKLGITPPGNAPTVTSMSSINNTVATPASYHTKDDPRGLSVLKQ
130 140 150 160 170 180
140 150 160 170 180
pF1KB3 ----HDVEINKIISTTASKTETPIVSKSLSSSLDDTEVKKVMEECKRLQGEVQRLREENK
.:.: .: . .::: . :. : : ::.:::..:.::::::::::...: :::.
CCDS11 EKQKNDMEPSKAVPLNASKQDGPM-PKPHSVSLNDTETRKLMEECKRLQGEMMKLSEENR
190 200 210 220 230
190 200 210 220 230 240
pF1KB3 QFKEEDGLRMRKTVQSNSPISALAPTGKEEGLSTRLLALVVLFFIVGVIIGKIAL
....: :::.::...:..: :. . . ... ... : .:.:.
CCDS11 HLRDE-GLRLRKVAHSDKPGSTSTASFRDN-VTSPLPSLLVVIAAIFIGFFLGKFIL
240 250 260 270 280 290
>>CCDS56198.1 VAPB gene_id:9217|Hs108|chr20 (99 aa)
initn: 463 init1: 463 opt: 467 Z-score: 496.8 bits: 98.1 E(32554): 2.4e-21
Smith-Waterman score: 467; 80.0% identity (87.8% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB3 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 IDAGASINVSVMLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLR
:::::::::: : . . ... .: .
CCDS56 IDAGASINVSGRRWTADEEDSAEQQPHFSISPNWEGRRP
70 80 90
243 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:11:57 2016 done: Sat Nov 5 05:11:58 2016
Total Scan time: 2.040 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]