Result of FASTA (ccds) for
pF1KB3544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3544, 108 aa
1>>>pF1KB3544 108 - 108 aa - 108 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9216+/-0.00057; mu= 11.5642+/- 0.034
mean_var=56.0159+/-10.968, 0's: 0 Z-trim(112.1): 31 B-trim: 0 in 0/51
Lambda= 0.171364
statistics sampled from 12925 (12956) to 12925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.398), width: 16
Scan time: 1.430
The best scores are: opt bits E(32554)
CCDS13014.1 FKBP1A gene_id:2280|Hs108|chr20 ( 108) 736 189.1 4.6e-49
CCDS1706.1 FKBP1B gene_id:2281|Hs108|chr2 ( 108) 641 165.6 5.4e-42
CCDS82423.1 FKBP1B gene_id:2281|Hs108|chr2 ( 79) 447 117.6 1.1e-27
CCDS33153.1 FKBP1B gene_id:2281|Hs108|chr2 ( 80) 415 109.6 2.8e-25
CCDS8512.1 FKBP4 gene_id:2288|Hs108|chr12 ( 459) 338 91.0 6.5e-19
CCDS54996.1 FKBP5 gene_id:2289|Hs108|chr6 ( 268) 321 86.7 7.6e-18
CCDS4808.1 FKBP5 gene_id:2289|Hs108|chr6 ( 457) 321 86.8 1.2e-17
CCDS8063.1 FKBP2 gene_id:2286|Hs108|chr11 ( 142) 305 82.6 6.9e-17
CCDS9683.1 FKBP3 gene_id:2287|Hs108|chr14 ( 224) 291 79.2 1.1e-15
CCDS11409.1 FKBP10 gene_id:60681|Hs108|chr17 ( 582) 260 71.8 5.1e-13
CCDS5423.1 FKBP14 gene_id:55033|Hs108|chr7 ( 211) 252 69.6 8.5e-13
CCDS46462.1 FKBP7 gene_id:51661|Hs108|chr2 ( 221) 249 68.8 1.5e-12
CCDS5439.1 FKBP9 gene_id:11328|Hs108|chr7 ( 570) 247 68.6 4.6e-12
CCDS2280.1 FKBP7 gene_id:51661|Hs108|chr2 ( 222) 237 65.9 1.2e-11
CCDS64623.1 FKBP9 gene_id:11328|Hs108|chr7 ( 338) 231 64.5 4.6e-11
CCDS64622.1 FKBP9 gene_id:11328|Hs108|chr7 ( 623) 231 64.6 7.7e-11
CCDS8773.1 FKBP11 gene_id:51303|Hs108|chr12 ( 201) 225 62.9 8.3e-11
>>CCDS13014.1 FKBP1A gene_id:2280|Hs108|chr20 (108 aa)
initn: 736 init1: 736 opt: 736 Z-score: 994.3 bits: 189.1 E(32554): 4.6e-49
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
70 80 90 100
>>CCDS1706.1 FKBP1B gene_id:2281|Hs108|chr2 (108 aa)
initn: 641 init1: 641 opt: 641 Z-score: 867.4 bits: 165.6 E(32554): 5.4e-42
Smith-Waterman score: 641; 83.3% identity (97.2% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
:::..:::::::::::::.::::::::::::..:::::::::::::::: .::::::.:.
CCDS17 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
CCDS17 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
70 80 90 100
>>CCDS82423.1 FKBP1B gene_id:2281|Hs108|chr2 (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 610.2 bits: 117.6 E(32554): 1.1e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
CCDS82 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
CCDS82 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>CCDS33153.1 FKBP1B gene_id:2281|Hs108|chr2 (80 aa)
initn: 426 init1: 407 opt: 415 Z-score: 567.4 bits: 109.6 E(32554): 2.8e-25
Smith-Waterman score: 415; 75.9% identity (89.9% similar) in 79 aa overlap (1-79:1-77)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
:::..:::::::::::::.::::::::::::..:::::::::::::::: .::::::.:.
CCDS33 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::. : . : : :
CCDS33 EEGAAQL--GPLSPLPICPHPC
70 80
>>CCDS8512.1 FKBP4 gene_id:2288|Hs108|chr12 (459 aa)
initn: 372 init1: 338 opt: 338 Z-score: 453.0 bits: 91.0 E(32554): 6.5e-19
Smith-Waterman score: 338; 52.0% identity (75.5% similar) in 98 aa overlap (11-108:41-138)
10 20 30 40
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSS
: : .: :. ::::: : :: :::::
CCDS85 SGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSS
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVF
::. :.: ::: :::..:. ..: :.::. ..: .:.::::..: : :::.:::::
CCDS85 LDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVF
80 90 100 110 120 130
pF1KB3 DVELLKLE
.:::....
CCDS85 EVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF
140 150 160 170 180 190
>>CCDS54996.1 FKBP5 gene_id:2289|Hs108|chr6 (268 aa)
initn: 321 init1: 321 opt: 321 Z-score: 433.9 bits: 86.7 E(32554): 7.6e-18
Smith-Waterman score: 321; 50.0% identity (72.4% similar) in 98 aa overlap (11-108:41-138)
10 20 30 40
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSS
:.:. : :. ::: : : .:::::::
CCDS54 EESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSS
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVF
.:::.:: : ::: .::..:. ::: :. :. .: .:.::::..: :: .::: :
CCDS54 HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFF
80 90 100 110 120 130
pF1KB3 DVELLKLE
..::: ..
CCDS54 EIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTV
140 150 160 170 180 190
>>CCDS4808.1 FKBP5 gene_id:2289|Hs108|chr6 (457 aa)
initn: 321 init1: 321 opt: 321 Z-score: 430.4 bits: 86.8 E(32554): 1.2e-17
Smith-Waterman score: 321; 50.0% identity (72.4% similar) in 98 aa overlap (11-108:41-138)
10 20 30 40
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSS
:.:. : :. ::: : : .:::::::
CCDS48 EESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSS
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVF
.:::.:: : ::: .::..:. ::: :. :. .: .:.::::..: :: .::: :
CCDS48 HDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFF
80 90 100 110 120 130
pF1KB3 DVELLKLE
..::: ..
CCDS48 EIELLDFKGEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRMFDCRDVAFTV
140 150 160 170 180 190
>>CCDS8063.1 FKBP2 gene_id:2286|Hs108|chr11 (142 aa)
initn: 296 init1: 296 opt: 305 Z-score: 416.7 bits: 82.6 E(32554): 6.9e-17
Smith-Waterman score: 305; 50.5% identity (72.5% similar) in 91 aa overlap (18-108:47-137)
10 20 30 40
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPF
..:.. .:::: :::: .:::: .:.::
CCDS80 SAVATATGAEGKRKLQIGVKKRVDHCPIKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPF
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 KFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL
: :: .::.::..:. : :.. ::.: . .:: : : :: :::::.:::::.
CCDS80 VFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKI
80 90 100 110 120 130
pF1KB3 E
:
CCDS80 ERRTEL
140
>>CCDS9683.1 FKBP3 gene_id:2287|Hs108|chr14 (224 aa)
initn: 298 init1: 164 opt: 291 Z-score: 395.0 bits: 79.2 E(32554): 1.1e-15
Smith-Waterman score: 292; 44.1% identity (70.3% similar) in 111 aa overlap (8-108:116-224)
10 20 30
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVH--YTGMLEDGK
.. :: .:::.:. ::: ::: :.::
CCDS96 KNVKLNEDKPKETKSEETLDEGPPKYTKSVLKKGDKTNFPKKGD--VVHCWYTGTLQDGT
90 100 110 120 130 140
40 50 60 70 80
pF1KB3 KFDSS------RDRN-KPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGH
::.. . .: ::..: .: .:::::.:.. :: :..:.: : :..::: :.
CCDS96 VFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQ
150 160 170 180 190 200
90 100
pF1KB3 PGI-IPPHATLVFDVELLKLE
: :::.: :.:.:::. ..
CCDS96 PDAKIPPNAKLTFEVELVDID
210 220
>>CCDS11409.1 FKBP10 gene_id:60681|Hs108|chr17 (582 aa)
initn: 257 init1: 257 opt: 260 Z-score: 347.3 bits: 71.8 E(32554): 5.1e-13
Smith-Waterman score: 260; 44.2% identity (66.3% similar) in 95 aa overlap (14-105:53-147)
10 20 30 40
pF1KB3 MGVQVETISPGDGRTFPKR---GQTCVVHYTGMLEDGKKFDSS
:. :.. :. ::.: .:::::::::
CCDS11 VVQAVGRGLGRASPAGGPLEDVVIERYHIPRACPREVQMGDFVRYHYNGTFEDGKKFDSS
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB3 RDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVF
::: ...: ..: : ..:. : :..: .: . : .::. : :.::: ::: :
CCDS11 YDRNTLVAIVVGVGRLITGMDRGLMGMCVNERRRLIVPPHLGYGSIGLAGLIPPDATLYF
90 100 110 120 130 140
pF1KB3 DVELLKLE
:: ::
CCDS11 DVVLLDVWNKEDTVQVSTLLRPPHCPRMVQDGDFVRYHYNGTLLDGTSFDTSYSKGGTYD
150 160 170 180 190 200
108 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:35:12 2016 done: Fri Nov 4 02:35:12 2016
Total Scan time: 1.430 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]