Result of FASTA (omim) for
pF1KB3544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3544, 108 aa
1>>>pF1KB3544 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2150+/-0.000275; mu= 9.7577+/- 0.017
mean_var=57.8093+/-11.352, 0's: 0 Z-trim(119.2): 53 B-trim: 0 in 0/57
Lambda= 0.168685
statistics sampled from 32805 (32862) to 32805 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.385), width: 16
Scan time: 3.920
The best scores are: opt bits E(85289)
NP_463460 (OMIM: 186945) peptidyl-prolyl cis-trans ( 108) 736 186.5 7.1e-48
NP_000792 (OMIM: 186945) peptidyl-prolyl cis-trans ( 108) 736 186.5 7.1e-48
NP_004107 (OMIM: 600620) peptidyl-prolyl cis-trans ( 108) 641 163.4 6.5e-41
XP_016859083 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 447 116.1 8e-27
XP_016859085 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 447 116.1 8e-27
XP_016859084 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 447 116.1 8e-27
NP_001309893 (OMIM: 600620) peptidyl-prolyl cis-tr ( 79) 447 116.1 8e-27
XP_016859082 (OMIM: 600620) PREDICTED: peptidyl-pr ( 79) 447 116.1 8e-27
NP_001309892 (OMIM: 600620) peptidyl-prolyl cis-tr ( 79) 447 116.1 8e-27
NP_473374 (OMIM: 600620) peptidyl-prolyl cis-trans ( 80) 415 108.3 1.8e-24
XP_011531001 (OMIM: 600620) PREDICTED: peptidyl-pr ( 100) 410 107.2 5.1e-24
NP_002005 (OMIM: 600611) peptidyl-prolyl cis-trans ( 459) 338 89.9 3.6e-18
XP_011519231 (OMIM: 600611) PREDICTED: peptidyl-pr ( 414) 325 86.7 3e-17
NP_001139249 (OMIM: 602623,608516) peptidyl-prolyl ( 268) 321 85.7 4e-17
NP_001139248 (OMIM: 602623,608516) peptidyl-prolyl ( 457) 321 85.8 6.4e-17
NP_004108 (OMIM: 602623,608516) peptidyl-prolyl ci ( 457) 321 85.8 6.4e-17
NP_001139247 (OMIM: 602623,608516) peptidyl-prolyl ( 457) 321 85.8 6.4e-17
NP_476433 (OMIM: 186946) peptidyl-prolyl cis-trans ( 142) 305 81.7 3.4e-16
XP_005273905 (OMIM: 186946) PREDICTED: peptidyl-pr ( 142) 305 81.7 3.4e-16
NP_001128680 (OMIM: 186946) peptidyl-prolyl cis-tr ( 142) 305 81.7 3.4e-16
NP_004461 (OMIM: 186946) peptidyl-prolyl cis-trans ( 142) 305 81.7 3.4e-16
XP_011534867 (OMIM: 186947) PREDICTED: peptidyl-pr ( 191) 291 78.3 4.7e-15
NP_002004 (OMIM: 186947) peptidyl-prolyl cis-trans ( 224) 291 78.3 5.4e-15
NP_068758 (OMIM: 259450,607063,610968) peptidyl-pr ( 582) 260 71.0 2.3e-12
XP_011523401 (OMIM: 259450,607063,610968) PREDICTE ( 601) 260 71.0 2.4e-12
XP_016876582 (OMIM: 186947) PREDICTED: peptidyl-pr ( 196) 252 68.8 3.4e-12
NP_060416 (OMIM: 614505,614557) peptidyl-prolyl ci ( 211) 252 68.8 3.7e-12
XP_016876581 (OMIM: 186947) PREDICTED: peptidyl-pr ( 229) 252 68.9 3.9e-12
NP_001128684 (OMIM: 607062) peptidyl-prolyl cis-tr ( 221) 249 68.1 6.3e-12
XP_011513417 (OMIM: 616257) PREDICTED: peptidyl-pr ( 359) 247 67.7 1.4e-11
NP_009201 (OMIM: 616257) peptidyl-prolyl cis-trans ( 570) 247 67.8 2e-11
NP_851939 (OMIM: 607062) peptidyl-prolyl cis-trans ( 222) 237 65.2 4.8e-11
NP_001271272 (OMIM: 616257) peptidyl-prolyl cis-tr ( 338) 231 63.8 1.9e-10
NP_001271270 (OMIM: 616257) peptidyl-prolyl cis-tr ( 623) 231 63.9 3.3e-10
NP_057678 (OMIM: 610571) peptidyl-prolyl cis-trans ( 201) 225 62.3 3.3e-10
XP_011523402 (OMIM: 259450,607063,610968) PREDICTE ( 510) 223 61.9 1.1e-09
XP_016868231 (OMIM: 604839) PREDICTED: inactive pe ( 266) 217 60.4 1.6e-09
XP_006716216 (OMIM: 604839) PREDICTED: inactive pe ( 282) 217 60.4 1.7e-09
XP_016868230 (OMIM: 604839) PREDICTED: inactive pe ( 317) 217 60.4 1.9e-09
NP_001128683 (OMIM: 604839) inactive peptidyl-prol ( 322) 217 60.4 1.9e-09
NP_003593 (OMIM: 604839) inactive peptidyl-prolyl ( 327) 217 60.4 2e-09
NP_001186715 (OMIM: 186945) peptidyl-prolyl cis-tr ( 97) 196 55.1 2.3e-08
NP_001137254 (OMIM: 610571) peptidyl-prolyl cis-tr ( 146) 190 53.7 9.2e-08
NP_001295302 (OMIM: 604840) peptidyl-prolyl cis-tr ( 412) 190 53.9 2.3e-07
XP_005246695 (OMIM: 607062) PREDICTED: peptidyl-pr ( 181) 177 50.6 1e-06
XP_011526166 (OMIM: 604840) PREDICTED: peptidyl-pr ( 383) 178 50.9 1.6e-06
NP_036313 (OMIM: 604840) peptidyl-prolyl cis-trans ( 413) 178 51.0 1.7e-06
XP_011526165 (OMIM: 604840) PREDICTED: peptidyl-pr ( 413) 178 51.0 1.7e-06
NP_001268233 (OMIM: 604839) inactive peptidyl-prol ( 297) 153 44.8 8.9e-05
>>NP_463460 (OMIM: 186945) peptidyl-prolyl cis-trans iso (108 aa)
initn: 736 init1: 736 opt: 736 Z-score: 980.5 bits: 186.5 E(85289): 7.1e-48
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_463 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
::::::::::::::::::::::::::::::::::::::::::::::::
NP_463 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
70 80 90 100
>>NP_000792 (OMIM: 186945) peptidyl-prolyl cis-trans iso (108 aa)
initn: 736 init1: 736 opt: 736 Z-score: 980.5 bits: 186.5 E(85289): 7.1e-48
Smith-Waterman score: 736; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
70 80 90 100
>>NP_004107 (OMIM: 600620) peptidyl-prolyl cis-trans iso (108 aa)
initn: 641 init1: 641 opt: 641 Z-score: 855.5 bits: 163.4 E(85289): 6.5e-41
Smith-Waterman score: 641; 83.3% identity (97.2% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
:::..:::::::::::::.::::::::::::..:::::::::::::::: .::::::.:.
NP_004 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
NP_004 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
70 80 90 100
>>XP_016859083 (OMIM: 600620) PREDICTED: peptidyl-prolyl (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 602.5 bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
XP_016 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>XP_016859085 (OMIM: 600620) PREDICTED: peptidyl-prolyl (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 602.5 bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
XP_016 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>XP_016859084 (OMIM: 600620) PREDICTED: peptidyl-prolyl (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 602.5 bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
XP_016 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>NP_001309893 (OMIM: 600620) peptidyl-prolyl cis-trans (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 602.5 bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
NP_001 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
NP_001 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>XP_016859082 (OMIM: 600620) PREDICTED: peptidyl-prolyl (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 602.5 bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
XP_016 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
XP_016 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>NP_001309892 (OMIM: 600620) peptidyl-prolyl cis-trans (79 aa)
initn: 447 init1: 447 opt: 447 Z-score: 602.5 bits: 116.1 E(85289): 8e-27
Smith-Waterman score: 447; 81.0% identity (96.2% similar) in 79 aa overlap (30-108:1-79)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
::..:::::::::::::::: .::::::.:.
NP_001 MLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::::.::::::: .:: :::::::::.:::.:::.::::::.::
NP_001 EEGAAQMSLGQRAKLTCTPDVAYGATGHPGVIPPNATLIFDVELLNLE
40 50 60 70
>>NP_473374 (OMIM: 600620) peptidyl-prolyl cis-trans iso (80 aa)
initn: 426 init1: 407 opt: 415 Z-score: 560.4 bits: 108.3 E(85289): 1.8e-24
Smith-Waterman score: 415; 75.9% identity (89.9% similar) in 79 aa overlap (1-79:1-77)
10 20 30 40 50 60
pF1KB3 MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGW
:::..:::::::::::::.::::::::::::..:::::::::::::::: .::::::.:.
NP_473 MGVEIETISPGDGRTFPKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGF
10 20 30 40 50 60
70 80 90 100
pF1KB3 EEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKLE
:::.::. : . : : :
NP_473 EEGAAQL--GPLSPLPICPHPC
70 80
108 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:35:13 2016 done: Fri Nov 4 02:35:13 2016
Total Scan time: 3.920 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]