FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3557, 300 aa
  1>>>pF1KB3557 300 - 300 aa - 300 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9547+/-0.000914; mu= 11.5508+/- 0.055
 mean_var=62.1509+/-12.529, 0's: 0 Z-trim(104.2): 24  B-trim: 0 in 0/51
 Lambda= 0.162686
 statistics sampled from 7795 (7805) to 7795 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.621), E-opt: 0.2 (0.24), width:  16
 Scan time:  2.440

The best scores are:                                      opt bits E(32554)
CCDS1604.1 GGPS1 gene_id:9453|Hs108|chr1           ( 300) 1976 472.4 1.8e-133


>>CCDS1604.1 GGPS1 gene_id:9453|Hs108|chr1                (300 aa)
 initn: 1976 init1: 1976 opt: 1976  Z-score: 2509.9  bits: 472.4 E(32554): 1.8e-133
Smith-Waterman score: 1976; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)

               10        20        30        40        50        60
pF1KB3 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
              250       260       270       280       290       300




300 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:12:32 2016 done: Sat Nov  5 05:12:32 2016
 Total Scan time:  2.440 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]