Result of FASTA (omim) for
pF1KB3557
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3557, 300 aa
1>>>pF1KB3557 300 - 300 aa - 300 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2441+/-0.000414; mu= 15.9473+/- 0.026
mean_var=63.6800+/-12.731, 0's: 0 Z-trim(111.1): 26 B-trim: 35 in 1/51
Lambda= 0.160721
statistics sampled from 19608 (19626) to 19608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.607), E-opt: 0.2 (0.23), width: 16
Scan time: 7.040
The best scores are: opt bits E(85289)
NP_001032354 (OMIM: 606982) geranylgeranyl pyropho ( 300) 1976 467.0 2.1e-131
XP_011517739 (OMIM: 607429,614651) PREDICTED: deca ( 292) 174 49.1 1.2e-05
XP_016871500 (OMIM: 607429,614651) PREDICTED: deca ( 308) 174 49.1 1.3e-05
NP_055132 (OMIM: 607429,614651) decaprenyl-diphosp ( 415) 174 49.2 1.6e-05
NP_001308908 (OMIM: 607429,614651) decaprenyl-diph ( 245) 163 46.5 6.2e-05
>>NP_001032354 (OMIM: 606982) geranylgeranyl pyrophospha (300 aa)
initn: 1976 init1: 1976 opt: 1976 Z-score: 2480.2 bits: 467.0 E(85289): 2.1e-131
Smith-Waterman score: 1976; 100.0% identity (100.0% similar) in 300 aa overlap (1-300:1-300)
10 20 30 40 50 60
pF1KB3 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEKTQETVQRILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNAS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKEDLKPLLNTL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTEN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
250 260 270 280 290 300
>>XP_011517739 (OMIM: 607429,614651) PREDICTED: decapren (292 aa)
initn: 141 init1: 88 opt: 174 Z-score: 222.2 bits: 49.1 E(85289): 1.2e-05
Smith-Waterman score: 174; 21.6% identity (57.6% similar) in 250 aa overlap (49-294:42-286)
20 30 40 50 60 70
pF1KB3 LLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPV
: ..::.:.:::. ::. :... ::: .
XP_011 AFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHT
20 30 40 50 60 70
80 90 100 110 120 130
pF1KB3 AHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTC
...:.: ... ... . . . . . .....:. . .: .:. :.. ..: .
XP_011 VNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENEN-
80 90 100 110 120 130
140 150 160 170 180 190
pF1KB3 PTEEEYKAMVLQKTGGLFG---LAVGLMQLFSDYKEDLKPLLN-TLGLFFQIRDDYANLH
.: ...::..:.. ::... . ... . ..:. ::. :: ..
XP_011 ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFT
140 150 160 170 180 190
200 210 220 230 240 250
pF1KB3 SKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDV
: . .: :: : . :.. : . :: . . :.:. . :. . . :..
XP_011 SCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAM--IMRRFSLPGDVDRARQYVLQSD
200 210 220 230 240
260 270 280 290 300
pF1KB3 GSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
: . : .. .: ..:. .:: ::.. ::..
XP_011 G-VQQTTYLAQQYCHEAIREISKLRPSPERDALIQ-LSEIVLTRDK
250 260 270 280 290
>>XP_016871500 (OMIM: 607429,614651) PREDICTED: decapren (308 aa)
initn: 141 init1: 88 opt: 174 Z-score: 221.9 bits: 49.1 E(85289): 1.3e-05
Smith-Waterman score: 174; 21.6% identity (57.6% similar) in 250 aa overlap (49-294:58-302)
20 30 40 50 60 70
pF1KB3 LLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPV
: ..::.:.:::. ::. :... ::: .
XP_016 AFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHT
30 40 50 60 70 80
80 90 100 110 120 130
pF1KB3 AHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTC
...:.: ... ... . . . . . .....:. . .: .:. :.. ..: .
XP_016 VNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENEN-
90 100 110 120 130 140
140 150 160 170 180 190
pF1KB3 PTEEEYKAMVLQKTGGLFG---LAVGLMQLFSDYKEDLKPLLN-TLGLFFQIRDDYANLH
.: ...::..:.. ::... . ... . ..:. ::. :: ..
XP_016 ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFT
150 160 170 180 190 200
200 210 220 230 240 250
pF1KB3 SKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDV
: . .: :: : . :.. : . :: . . :.:. . :. . . :..
XP_016 SCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAM--IMRRFSLPGDVDRARQYVLQSD
210 220 230 240 250 260
260 270 280 290 300
pF1KB3 GSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
: . : .. .: ..:. .:: ::.. ::..
XP_016 G-VQQTTYLAQQYCHEAIREISKLRPSPERDALIQ-LSEIVLTRDK
270 280 290 300
>>NP_055132 (OMIM: 607429,614651) decaprenyl-diphosphate (415 aa)
initn: 141 init1: 88 opt: 174 Z-score: 219.9 bits: 49.2 E(85289): 1.6e-05
Smith-Waterman score: 174; 21.6% identity (57.6% similar) in 250 aa overlap (49-294:165-409)
20 30 40 50 60 70
pF1KB3 LLQLPGKQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPV
: ..::.:.:::. ::. :... ::: .
NP_055 AFRPIIVALMARACNIHHNNSRHVQASQRAIALIAEMIHTASLVHDDVIDDASSRRGKHT
140 150 160 170 180 190
80 90 100 110 120 130
pF1KB3 AHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTC
...:.: ... ... . . . . . .....:. . .: .:. :.. ..: .
NP_055 VNKIWGEKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENEN-
200 210 220 230 240 250
140 150 160 170 180 190
pF1KB3 PTEEEYKAMVLQKTGGLFG---LAVGLMQLFSDYKEDLKPLLN-TLGLFFQIRDDYANLH
.: ...::..:.. ::... . ... . ..:. ::. :: ..
NP_055 ERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFT
260 270 280 290 300 310
200 210 220 230 240 250
pF1KB3 SKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDV
: . .: :: : . :.. : . :: . . :.:. . :. . . :..
NP_055 SCSDQMGKPTSADLKLGLATGPVLFACQQFPEMNAM--IMRRFSLPGDVDRARQYVLQSD
320 330 340 350 360 370
260 270 280 290 300
pF1KB3 GSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
: . : .. .: ..:. .:: ::.. ::..
NP_055 G-VQQTTYLAQQYCHEAIREISKLRPSPERDALIQ-LSEIVLTRDK
380 390 400 410
>>NP_001308908 (OMIM: 607429,614651) decaprenyl-diphosph (245 aa)
initn: 130 init1: 77 opt: 163 Z-score: 209.6 bits: 46.5 E(85289): 6.2e-05
Smith-Waterman score: 163; 21.3% identity (57.4% similar) in 244 aa overlap (55-294:1-239)
30 40 50 60 70 80
pF1KB3 KQVRTKLSQAFNHWLKVPEDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIYG
:.:.:::. ::. :... ::: ....:.:
NP_001 MIHTASLVHDDVIDDASSRRGKHTVNKIWG
10 20 30
90 100 110 120 130 140
pF1KB3 IPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEY
... ... . . . . . .....:. . .: .:. :.. ..: . .:
NP_001 EKKAVLAGDLILSAASIALARIGNTTVISILTQVIEDLVRGEFLQLGSKENEN-ERFAHY
40 50 60 70 80
150 160 170 180 190 200
pF1KB3 KAMVLQKTGGLFG---LAVGLMQLFSDYKEDLKPLLN-TLGLFFQIRDDYANLHSKEYSE
...::..:.. ::... . ... . ..:. ::. :: .. : .
NP_001 LEKTFKKTASLIANSCKAVSVLGCPDPVVHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQM
90 100 110 120 130 140
210 220 230 240 250 260
pF1KB3 NKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYT
.: :: : . :.. : . :: . . :.:. . :. . . :.. : . :
NP_001 GKPTSADLKLGLATGPVLFACQQFPEMNAM--IMRRFSLPGDVDRARQYVLQSDG-VQQT
150 160 170 180 190 200
270 280 290 300
pF1KB3 RNTLKELEAKAYKQIDARGGNPELVALVKHLSKMFKEENE
.. .: ..:. .:: ::.. ::..
NP_001 TYLAQQYCHEAIREISKLRPSPERDALIQ-LSEIVLTRDK
210 220 230 240
300 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:12:33 2016 done: Sat Nov 5 05:12:34 2016
Total Scan time: 7.040 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]