Result of FASTA (ccds) for
pF1KB3561
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3561, 207 aa
1>>>pF1KB3561 207 - 207 aa - 207 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4491+/-0.00102; mu= 12.7445+/- 0.060
mean_var=79.0175+/-15.298, 0's: 0 Z-trim(105.2): 81 B-trim: 167 in 2/48
Lambda= 0.144282
statistics sampled from 8201 (8280) to 8201 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.254), width: 16
Scan time: 2.000
The best scores are: opt bits E(32554)
CCDS13013.1 SDCBP2 gene_id:27111|Hs108|chr20 ( 207) 1359 292.4 1.4e-79
CCDS42848.1 SDCBP2 gene_id:27111|Hs108|chr20 ( 292) 1359 292.5 1.8e-79
CCDS47863.1 SDCBP gene_id:6386|Hs108|chr8 ( 292) 993 216.3 1.5e-56
CCDS47862.1 SDCBP gene_id:6386|Hs108|chr8 ( 297) 993 216.3 1.5e-56
CCDS6172.1 SDCBP gene_id:6386|Hs108|chr8 ( 298) 993 216.3 1.5e-56
CCDS83298.1 SDCBP gene_id:6386|Hs108|chr8 ( 318) 993 216.3 1.6e-56
>>CCDS13013.1 SDCBP2 gene_id:27111|Hs108|chr20 (207 aa)
initn: 1359 init1: 1359 opt: 1359 Z-score: 1542.5 bits: 292.4 E(32554): 1.4e-79
Smith-Waterman score: 1359; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)
10 20 30 40 50 60
pF1KB3 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 VIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIP
130 140 150 160 170 180
190 200
pF1KB3 SVIYEHMVKKLPPVLLHHTMDHSIPDA
:::::::::::::::::::::::::::
CCDS13 SVIYEHMVKKLPPVLLHHTMDHSIPDA
190 200
>>CCDS42848.1 SDCBP2 gene_id:27111|Hs108|chr20 (292 aa)
initn: 1359 init1: 1359 opt: 1359 Z-score: 1540.4 bits: 292.5 E(32554): 1.8e-79
Smith-Waterman score: 1359; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:86-292)
10 20 30
pF1KB3 MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
::::::::::::::::::::::::::::::
CCDS42 LSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDE
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB3 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB3 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
180 190 200 210 220 230
160 170 180 190 200
pF1KB3 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
240 250 260 270 280 290
>>CCDS47863.1 SDCBP gene_id:6386|Hs108|chr8 (292 aa)
initn: 993 init1: 993 opt: 993 Z-score: 1128.6 bits: 216.3 E(32554): 1.5e-56
Smith-Waterman score: 993; 66.0% identity (92.2% similar) in 206 aa overlap (1-206:86-291)
10 20 30
pF1KB3 MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
::::::: ..:.:::::: :.::. ::::.
CCDS47 NEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ
60 70 80 90 100 110
40 50 60 70 80 90
pF1KB3 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
:: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:.:
CCDS47 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA
120 130 140 150 160 170
100 110 120 130 140 150
pF1KB3 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
:.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .::.
CCDS47 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI
180 190 200 210 220 230
160 170 180 190 200
pF1KB3 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
.:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ... :::.::.
CCDS47 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
240 250 260 270 280 290
>>CCDS47862.1 SDCBP gene_id:6386|Hs108|chr8 (297 aa)
initn: 1013 init1: 993 opt: 993 Z-score: 1128.5 bits: 216.3 E(32554): 1.5e-56
Smith-Waterman score: 993; 66.0% identity (92.2% similar) in 206 aa overlap (1-206:91-296)
10 20 30
pF1KB3 MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
::::::: ..:.:::::: :.::. ::::.
CCDS47 LNEEEIRANVAVVSGAPLQGLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB3 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
:: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:.:
CCDS47 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB3 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
:.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .::.
CCDS47 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI
190 200 210 220 230 240
160 170 180 190 200
pF1KB3 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
.:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ... :::.::.
CCDS47 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
250 260 270 280 290
>>CCDS6172.1 SDCBP gene_id:6386|Hs108|chr8 (298 aa)
initn: 1013 init1: 993 opt: 993 Z-score: 1128.5 bits: 216.3 E(32554): 1.5e-56
Smith-Waterman score: 993; 66.0% identity (92.2% similar) in 206 aa overlap (1-206:92-297)
10 20 30
pF1KB3 MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
::::::: ..:.:::::: :.::. ::::.
CCDS61 NEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ
70 80 90 100 110 120
40 50 60 70 80 90
pF1KB3 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
:: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:.:
CCDS61 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA
130 140 150 160 170 180
100 110 120 130 140 150
pF1KB3 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
:.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .::.
CCDS61 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI
190 200 210 220 230 240
160 170 180 190 200
pF1KB3 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
.:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ... :::.::.
CCDS61 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
250 260 270 280 290
>>CCDS83298.1 SDCBP gene_id:6386|Hs108|chr8 (318 aa)
initn: 1013 init1: 993 opt: 993 Z-score: 1128.1 bits: 216.3 E(32554): 1.6e-56
Smith-Waterman score: 993; 66.0% identity (92.2% similar) in 206 aa overlap (1-206:112-317)
10 20 30
pF1KB3 MVAPVTGYSLGVRRAEIKPGVREIHLCKDE
::::::: ..:.:::::: :.::. ::::.
CCDS83 LNEEEIRANVAVVSGAPLQGLVARPSSINYMVAPVTGNDVGIRRAEIKQGIREVILCKDQ
90 100 110 120 130 140
40 50 60 70 80 90
pF1KB3 RGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKA
:: ::::...:.:.::::::::.::::::::::::.:::.:..:::::: :::.:.:.:
CCDS83 DGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQA
150 160 170 180 190 200
100 110 120 130 140 150
pF1KB3 SGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEV
:.::....:::::.::.:::::: :::::..:.:::.:.:: ::::::::::.: .::.
CCDS83 FGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEI
210 220 230 240 250 260
160 170 180 190 200
pF1KB3 DGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA
.:::::::::..: .::.:.:.:::.::.:. :.::..:.. : ... :::.::.
CCDS83 NGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV
270 280 290 300 310
207 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:36:23 2016 done: Fri Nov 4 02:36:23 2016
Total Scan time: 2.000 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]