Result of FASTA (ccds) for
pF1KB3573
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3573, 536 aa
1>>>pF1KB3573 536 - 536 aa - 536 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3637+/-0.000927; mu= 17.9452+/- 0.056
mean_var=64.6260+/-13.259, 0's: 0 Z-trim(105.7): 14 B-trim: 481 in 2/49
Lambda= 0.159540
statistics sampled from 8561 (8569) to 8561 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.263), width: 16
Scan time: 3.350
The best scores are: opt bits E(32554)
CCDS1102.1 GBA gene_id:2629|Hs108|chr1 ( 536) 3670 853.7 0
CCDS53373.1 GBA gene_id:2629|Hs108|chr1 ( 449) 3069 715.4 3.6e-206
CCDS53374.1 GBA gene_id:2629|Hs108|chr1 ( 487) 2661 621.5 7.1e-178
>>CCDS1102.1 GBA gene_id:2629|Hs108|chr1 (536 aa)
initn: 3670 init1: 3670 opt: 3670 Z-score: 4561.4 bits: 853.7 E(32554): 0
Smith-Waterman score: 3670; 100.0% identity (100.0% similar) in 536 aa overlap (1-536:1-536)
10 20 30 40 50 60
pF1KB3 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
430 440 450 460 470 480
490 500 510 520 530
pF1KB3 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
490 500 510 520 530
>>CCDS53373.1 GBA gene_id:2629|Hs108|chr1 (449 aa)
initn: 3069 init1: 3069 opt: 3069 Z-score: 3815.0 bits: 715.4 E(32554): 3.6e-206
Smith-Waterman score: 3069; 100.0% identity (100.0% similar) in 449 aa overlap (88-536:1-449)
60 70 80 90 100 110
pF1KB3 NATYCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKV
::::::::::::::::::::::::::::::
CCDS53 MELSMGPIQANHTGTGLLLTLQPEQKFQKV
10 20 30
120 130 140 150 160 170
pF1KB3 KGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KGFGGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADT
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB3 PDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PDDFQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLK
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB3 GQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GQPGDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRD
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB3 FIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FIARDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLA
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB3 PAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PAKATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGW
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB3 TDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TDWNLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVA
340 350 360 370 380 390
480 490 500 510 520 530
pF1KB3 SQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SQKNDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
400 410 420 430 440
>>CCDS53374.1 GBA gene_id:2629|Hs108|chr1 (487 aa)
initn: 2661 init1: 2661 opt: 2661 Z-score: 3306.9 bits: 621.5 E(32554): 7.1e-178
Smith-Waterman score: 3254; 90.9% identity (90.9% similar) in 536 aa overlap (1-536:1-487)
10 20 30 40 50 60
pF1KB3 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MEFSSPSREECPKPLSRVSIMAGSLTGLLLLQAVSWASGARPCIPKSFGYSSVVCVCNAT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTGLLLTLQPEQKFQKVKGF
:::::::::::::::::::::::::::::::::::::::::::
CCDS53 YCDSFDPPTFPALGTFSRYESTRSGRRMELSMGPIQANHTGTG-----------------
70 80 90 100
130 140 150 160 170 180
pF1KB3 GGAMTDAAALNILALSPPAQNLLLKSYFSEEGIGYNIIRVPMASCDFSIRTYTYADTPDD
::::::::::::::::::::::::::::
CCDS53 --------------------------------IGYNIIRVPMASCDFSIRTYTYADTPDD
110 120 130
190 200 210 220 230 240
pF1KB3 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FQLHNFSLPEEDTKLKIPLIHRALQLAQRPVSLLASPWTSPTWLKTNGAVNGKGSLKGQP
140 150 160 170 180 190
250 260 270 280 290 300
pF1KB3 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GDIYHQTWARYFVKFLDAYAEHKLQFWAVTAENEPSAGLLSGYPFQCLGFTPEHQRDFIA
200 210 220 230 240 250
310 320 330 340 350 360
pF1KB3 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RDLGPTLANSTHHNVRLLMLDDQRLLLPHWAKVVLTDPEAAKYVHGIAVHWYLDFLAPAK
260 270 280 290 300 310
370 380 390 400 410 420
pF1KB3 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ATLGETHRLFPNTMLFASEACVGSKFWEQSVRLGSWDRGMQYSHSIITNLLYHVVGWTDW
320 330 340 350 360 370
430 440 450 460 470 480
pF1KB3 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NLALNPEGGPNWVRNFVDSPIIVDITKDTFYKQPMFYHLGHFSKFIPEGSQRVGLVASQK
380 390 400 410 420 430
490 500 510 520 530
pF1KB3 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 NDLDAVALMHPDGSAVVVVLNRSSKDVPLTIKDPAVGFLETISPGYSIHTYLWRRQ
440 450 460 470 480
536 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 12:17:41 2016 done: Sat Nov 5 12:17:41 2016
Total Scan time: 3.350 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]