FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3608, 210 aa
  1>>>pF1KB3608 210 - 210 aa - 210 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7614+/-0.000642; mu= 17.0380+/- 0.039
 mean_var=63.7448+/-12.418, 0's: 0 Z-trim(110.6): 31  B-trim: 0 in 0/52
 Lambda= 0.160639
 statistics sampled from 11701 (11732) to 11701 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.36), width:  16
 Scan time:  2.140

The best scores are:                                      opt bits E(32554)
CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22         ( 226) 1412 335.1   2e-92
CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22         ( 241) 1412 335.2 2.1e-92
CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7          ( 196)  446 111.2 4.4e-25
CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7          ( 211)  446 111.2 4.7e-25


>>CCDS33650.1 PDGFB gene_id:5155|Hs108|chr22              (226 aa)
 initn: 1412 init1: 1412 opt: 1412  Z-score: 1772.8  bits: 335.1 E(32554): 2e-92
Smith-Waterman score: 1412; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:17-226)

                               10        20        30        40    
pF1KB3                 MLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELES
                       ::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MFIMGLGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELES
               10        20        30        40        50        60

           50        60        70        80        90       100    
pF1KB3 LARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCN
               70        80        90       100       110       120

          110       120       130       140       150       160    
pF1KB3 NRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 NRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGG
              130       140       150       160       170       180

          170       180       190       200       210
pF1KB3 SQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
              190       200       210       220      

>>CCDS13987.1 PDGFB gene_id:5155|Hs108|chr22              (241 aa)
 initn: 1412 init1: 1412 opt: 1412  Z-score: 1772.4  bits: 335.2 E(32554): 2.1e-92
Smith-Waterman score: 1412; 100.0% identity (100.0% similar) in 210 aa overlap (1-210:32-241)

                                             10        20        30
pF1KB3                               MLSDHSIRSFDDLQRLLHGDPGEEDGAELD
                                     ::::::::::::::::::::::::::::::
CCDS13 NRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELD
              10        20        30        40        50        60 

               40        50        60        70        80        90
pF1KB3 LNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVW
              70        80        90       100       110       120 

              100       110       120       130       140       150
pF1KB3 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE
             130       140       150       160       170       180 

              160       170       180       190       200       210
pF1KB3 TVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
             190       200       210       220       230       240 

>>CCDS47524.1 PDGFA gene_id:5154|Hs108|chr7               (196 aa)
 initn: 468 init1: 395 opt: 446  Z-score: 563.8  bits: 111.2 E(32554): 4.4e-25
Smith-Waterman score: 446; 48.1% identity (69.5% similar) in 154 aa overlap (5-153:39-183)

                                         10        20         30   
pF1KB3                           MLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNM
                                     ::::   ::::::. :  : ::.  :: ..
CCDS47 LLGCGYLAHVLAEEAEIPREVIERLARSQIHSIR---DLQRLLEIDSVGSEDS--LDTSL
       10        20        30        40           50          60   

            40            50        60        70        80         
pF1KB3 TRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
        :.:.    . . . :    :   :.  : ::.   ::::: ..:: :  .: :.::::.
CCDS47 -RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTSANFLI
             70        80        90          100       110         

      90       100       110       120       130       140         
pF1KB3 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
       :::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:: : :
CCDS47 WPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECAC
     120       130       140       150       160       170         

     150       160       170       180       190       200         
pF1KB3 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
        :..                                                        
CCDS47 ATTSLNPDYREEDTDVR                                           
     180       190                                                 

>>CCDS34578.1 PDGFA gene_id:5154|Hs108|chr7               (211 aa)
 initn: 484 init1: 395 opt: 446  Z-score: 563.3  bits: 111.2 E(32554): 4.7e-25
Smith-Waterman score: 446; 48.1% identity (69.5% similar) in 154 aa overlap (5-153:39-183)

                                         10        20         30   
pF1KB3                           MLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNM
                                     ::::   ::::::. :  : ::.  :: ..
CCDS34 LLGCGYLAHVLAEEAEIPREVIERLARSQIHSIR---DLQRLLEIDSVGSEDS--LDTSL
       10        20        30        40           50          60   

            40            50        60        70        80         
pF1KB3 TRSHSGGELESLARGR----RSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
        :.:.    . . . :    :   :.  : ::.   ::::: ..:: :  .: :.::::.
CCDS34 -RAHGVHATKHVPEKRPLPIRRKRSIEEAVPAV---CKTRTVIYEIPRSQVDPTSANFLI
             70        80        90          100       110         

      90       100       110       120       130       140         
pF1KB3 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
       :::::::.::.::::. .:.:.:..:. : :.: :.: ::::: .:.. : ::.:: : :
CCDS34 WPPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECAC
     120       130       140       150       160       170         

     150       160       170       180       190       200         
pF1KB3 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
        :..                                                        
CCDS34 ATTSLNPDYREEDTGRPRESGKKRKRKRLKPT                            
     180       190       200       210                             




210 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 21:42:55 2016 done: Sat Nov  5 21:42:55 2016
 Total Scan time:  2.140 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]