FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3632, 367 aa
  1>>>pF1KB3632 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4375+/-0.000786; mu= 15.8799+/- 0.047
 mean_var=66.4164+/-13.081, 0's: 0 Z-trim(107.9): 11  B-trim: 82 in 1/49
 Lambda= 0.157375
 statistics sampled from 9837 (9842) to 9837 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.302), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS518.1 UROD gene_id:7389|Hs108|chr1             ( 367) 2495 575.2 3.1e-164


>>CCDS518.1 UROD gene_id:7389|Hs108|chr1                  (367 aa)
 initn: 2495 init1: 2495 opt: 2495  Z-score: 3061.9  bits: 575.2 E(32554): 3.1e-164
Smith-Waterman score: 2495; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB3 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 SPEACCELTLQPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LYQRPQASHQLLRILTDALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 AKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 AKQVKARLREAGLAPVPMIIFAKDGHFALEELAQAGYEVVGLDWTVAPKKARECVGKTVT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 LQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 LQGNLDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHVGAFVDAVHKH
              310       320       330       340       350       360

              
pF1KB3 SRLLRQN
       :::::::
CCDS51 SRLLRQN
              




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:16:03 2016 done: Sat Nov  5 05:16:04 2016
 Total Scan time:  2.860 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]