FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3635, 178 aa
  1>>>pF1KB3635 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0785+/-0.000795; mu= 13.1269+/- 0.047
 mean_var=52.8300+/-10.272, 0's: 0 Z-trim(105.9): 16  B-trim: 3 in 1/49
 Lambda= 0.176455
 statistics sampled from 8684 (8688) to 8684 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.267), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS238.1 RPL11 gene_id:6135|Hs108|chr1            ( 178) 1191 310.8 2.8e-85


>>CCDS238.1 RPL11 gene_id:6135|Hs108|chr1                 (178 aa)
 initn: 1191 init1: 1191 opt: 1191  Z-score: 1644.6  bits: 310.8 E(32554): 2.8e-85
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB3 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB3 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
              130       140       150       160       170        




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:36:55 2016 done: Fri Nov  4 02:36:55 2016
 Total Scan time:  1.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]