FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3635, 178 aa
  1>>>pF1KB3635 178 - 178 aa - 178 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8833+/-0.000373; mu= 14.4489+/- 0.023
 mean_var=58.3329+/-11.401, 0's: 0 Z-trim(112.6): 11  B-trim: 36 in 1/53
 Lambda= 0.167926
 statistics sampled from 21535 (21539) to 21535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.253), width:  16
 Scan time:  5.450

The best scores are:                                      opt bits E(85289)
NP_000966 (OMIM: 604175,612562) 60S ribosomal prot ( 178) 1191 296.7 1.3e-80
NP_001186731 (OMIM: 604175,612562) 60S ribosomal p ( 177) 1172 292.1 3.2e-79


>>NP_000966 (OMIM: 604175,612562) 60S ribosomal protein   (178 aa)
 initn: 1191 init1: 1191 opt: 1191  Z-score: 1568.1  bits: 296.7 E(85289): 1.3e-80
Smith-Waterman score: 1191; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB3 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB3 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
              130       140       150       160       170        

>>NP_001186731 (OMIM: 604175,612562) 60S ribosomal prote  (177 aa)
 initn: 1172 init1: 1172 opt: 1172  Z-score: 1543.2  bits: 292.1 E(85289): 3.2e-79
Smith-Waterman score: 1172; 100.0% identity (100.0% similar) in 175 aa overlap (4-178:3-177)

               10        20        30        40        50        60
pF1KB3 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001  MADQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSF
                10        20        30        40        50         

               70        80        90       100       110       120
pF1KB3 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYD
      60        70        80        90       100       110         

              130       140       150       160       170        
pF1KB3 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
     120       130       140       150       160       170       




178 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:36:55 2016 done: Fri Nov  4 02:36:56 2016
 Total Scan time:  5.450 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]