FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3640, 419 aa
  1>>>pF1KB3640 419 - 419 aa - 419 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8230+/-0.00111; mu= -11.1634+/- 0.064
 mean_var=347.4718+/-79.385, 0's: 0 Z-trim(110.7): 178  B-trim: 290 in 1/54
 Lambda= 0.068804
 statistics sampled from 11650 (11832) to 11650 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.363), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS1239.1 UHMK1 gene_id:127933|Hs108|chr1         ( 419) 2835 295.7 5.3e-80
CCDS53424.1 UHMK1 gene_id:127933|Hs108|chr1        ( 344) 2322 244.8 9.8e-65
CCDS53423.1 UHMK1 gene_id:127933|Hs108|chr1        ( 345) 2210 233.6 2.2e-61


>>CCDS1239.1 UHMK1 gene_id:127933|Hs108|chr1              (419 aa)
 initn: 2835 init1: 2835 opt: 2835  Z-score: 1549.7  bits: 295.7 E(32554): 5.3e-80
Smith-Waterman score: 2835; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB3 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSL
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB3 LVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
              370       380       390       400       410         

>>CCDS53424.1 UHMK1 gene_id:127933|Hs108|chr1             (344 aa)
 initn: 2322 init1: 2322 opt: 2322  Z-score: 1275.6  bits: 244.8 E(32554): 9.8e-65
Smith-Waterman score: 2322; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB3 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSL
       :::::::::::::::::::::::::::::::::::::::::                   
CCDS53 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEGLC                
              310       320       330       340                    

              370       380       390       400       410         
pF1KB3 LVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL

>>CCDS53423.1 UHMK1 gene_id:127933|Hs108|chr1             (345 aa)
 initn: 2210 init1: 2210 opt: 2210  Z-score: 1215.5  bits: 233.6 E(32554): 2.2e-61
Smith-Waterman score: 2210; 100.0% identity (100.0% similar) in 330 aa overlap (90-419:16-345)

      60        70        80        90       100       110         
pF1KB3 GTTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVS
                                     ::::::::::::::::::::::::::::::
CCDS53                MFLTRPKVCVDLNRRVTLYGVFTIHFSPNVPSRCLLLELLDVSVS
                              10        20        30        40     

     120       130       140       150       160       170         
pF1KB3 ELLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 ELLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFG
          50        60        70        80        90       100     

     180       190       200       210       220       230         
pF1KB3 LSFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LSFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGM
         110       120       130       140       150       160     

     240       250       260       270       280       290         
pF1KB3 KLKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KLKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMAL
         170       180       190       200       210       220     

     300       310       320       330       340       350         
pF1KB3 CSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVS
         230       240       250       260       270       280     

     360       370       380       390       400       410         
pF1KB3 LLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
         290       300       310       320       330       340     




419 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:06:52 2016 done: Thu Nov  3 21:06:53 2016
 Total Scan time:  2.840 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]