FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3640, 419 aa
  1>>>pF1KB3640 419 - 419 aa - 419 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.0327+/-0.000509; mu= -16.3627+/- 0.030
 mean_var=652.4742+/-146.849, 0's: 0 Z-trim(118.2): 67  B-trim: 1815 in 1/56
 Lambda= 0.050210
 statistics sampled from 30938 (31008) to 30938 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.364), width:  16
 Scan time:  8.440

The best scores are:                                      opt bits E(85289)
NP_787062 (OMIM: 608849) serine/threonine-protein  ( 419) 2835 221.0 4.4e-57
NP_653225 (OMIM: 608849) serine/threonine-protein  ( 344) 2322 183.7 6.1e-46
NP_001171692 (OMIM: 608849) serine/threonine-prote ( 345) 2210 175.6 1.7e-43


>>NP_787062 (OMIM: 608849) serine/threonine-protein kina  (419 aa)
 initn: 2835 init1: 2835 opt: 2835  Z-score: 1145.7  bits: 221.0 E(85289): 4.4e-57
Smith-Waterman score: 2835; 100.0% identity (100.0% similar) in 419 aa overlap (1-419:1-419)

               10        20        30        40        50        60
pF1KB3 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSL
              310       320       330       340       350       360

              370       380       390       400       410         
pF1KB3 LVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_787 LVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
              370       380       390       400       410         

>>NP_653225 (OMIM: 608849) serine/threonine-protein kina  (344 aa)
 initn: 2322 init1: 2322 opt: 2322  Z-score: 945.8  bits: 183.7 E(85289): 6.1e-46
Smith-Waterman score: 2322; 100.0% identity (100.0% similar) in 341 aa overlap (1-341:1-341)

               10        20        30        40        50        60
pF1KB3 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MAGSGCAWGAEPPRFLEAFGRLWQVQSRLGSGSSASVYRVRCCGNPGSPPGALKQFLPPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 TTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVSE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 LLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 SFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGMK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 LKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMALC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVSL
       :::::::::::::::::::::::::::::::::::::::::                   
NP_653 SPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEGLC                
              310       320       330       340                    

              370       380       390       400       410         
pF1KB3 LVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL

>>NP_001171692 (OMIM: 608849) serine/threonine-protein k  (345 aa)
 initn: 2210 init1: 2210 opt: 2210  Z-score: 902.0  bits: 175.6 E(85289): 1.7e-43
Smith-Waterman score: 2210; 100.0% identity (100.0% similar) in 330 aa overlap (90-419:16-345)

      60        70        80        90       100       110         
pF1KB3 GTTGAAASAAEYGFRKERAALEQLQGHRNIVTLYGVFTIHFSPNVPSRCLLLELLDVSVS
                                     ::::::::::::::::::::::::::::::
NP_001                MFLTRPKVCVDLNRRVTLYGVFTIHFSPNVPSRCLLLELLDVSVS
                              10        20        30        40     

     120       130       140       150       160       170         
pF1KB3 ELLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELLLYSSHQGCSMWMIQHCARDVLEALAFLHHEGYVHADLKPRNILWSAENECFKLIDFG
          50        60        70        80        90       100     

     180       190       200       210       220       230         
pF1KB3 LSFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSFKEGNQDVKYIQTDGYRAPEAELQNCLAQAGLQSDTECTSAVDLWSLGIILLEMFSGM
         110       120       130       140       150       160     

     240       250       260       270       280       290         
pF1KB3 KLKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLKHTVRSQEWKANSSAIIDHIFASKAVVNAAIPAYHLRDLIKSMLHDDPSRRIPAEMAL
         170       180       190       200       210       220     

     300       310       320       330       340       350         
pF1KB3 CSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CSPFFSIPFAPHIEDLVMLPTPVLRLLNVLDDDYLENEEEYEDVVEDVKEECQKYGPVVS
         230       240       250       260       270       280     

     360       370       380       390       400       410         
pF1KB3 LLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LLVPKENPGRGQVFVEYANAGDSKAAQKLLTGRMFDGKFVVATFYPLSAYKRGYLYQTLL
         290       300       310       320       330       340     




419 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:06:53 2016 done: Thu Nov  3 21:06:55 2016
 Total Scan time:  8.440 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]