FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3641, 314 aa
  1>>>pF1KB3641 314 - 314 aa - 314 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.9052+/- 0.001; mu= 4.0797+/- 0.060
 mean_var=147.4875+/-29.302, 0's: 0 Z-trim(109.0): 32  B-trim: 0 in 0/51
 Lambda= 0.105608
 statistics sampled from 10585 (10605) to 10585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.677), E-opt: 0.2 (0.326), width:  16
 Scan time:  2.170

The best scores are:                                      opt bits E(32554)
CCDS43250.1 SPP1 gene_id:6696|Hs108|chr4           ( 314) 2110 333.0 1.9e-91
CCDS34027.1 SPP1 gene_id:6696|Hs108|chr4           ( 287) 1718 273.2 1.7e-73
CCDS3626.1 SPP1 gene_id:6696|Hs108|chr4            ( 300) 1639 261.2 7.2e-70


>>CCDS43250.1 SPP1 gene_id:6696|Hs108|chr4                (314 aa)
 initn: 2110 init1: 2110 opt: 2110  Z-score: 1755.4  bits: 333.0 E(32554): 1.9e-91
Smith-Waterman score: 2110; 100.0% identity (100.0% similar) in 314 aa overlap (1-314:1-314)

               10        20        30        40        50        60
pF1KB3 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
              250       260       270       280       290       300

              310    
pF1KB3 RISHELDSASSEVN
       ::::::::::::::
CCDS43 RISHELDSASSEVN
              310    

>>CCDS34027.1 SPP1 gene_id:6696|Hs108|chr4                (287 aa)
 initn: 1718 init1: 1718 opt: 1718  Z-score: 1433.2  bits: 273.2 E(32554): 1.7e-73
Smith-Waterman score: 1855; 91.4% identity (91.4% similar) in 314 aa overlap (1-314:1-287)

               10        20        30        40        50        60
pF1KB3 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA
       :::::::::::::::::::::::::::::::                           ::
CCDS34 MRIAVICFCLLGITCAIPVKQADSGSSEEKQ---------------------------NA
               10        20        30                              

               70        80        90       100       110       120
pF1KB3 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
            40        50        60        70        80        90   

              130       140       150       160       170       180
pF1KB3 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
           100       110       120       130       140       150   

              190       200       210       220       230       240
pF1KB3 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
           160       170       180       190       200       210   

              250       260       270       280       290       300
pF1KB3 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
           220       230       240       250       260       270   

              310    
pF1KB3 RISHELDSASSEVN
       ::::::::::::::
CCDS34 RISHELDSASSEVN
           280       

>>CCDS3626.1 SPP1 gene_id:6696|Hs108|chr4                 (300 aa)
 initn: 1627 init1: 1627 opt: 1639  Z-score: 1367.8  bits: 261.2 E(32554): 7.2e-70
Smith-Waterman score: 1986; 95.5% identity (95.5% similar) in 314 aa overlap (1-314:1-300)

               10        20        30        40        50        60
pF1KB3 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
CCDS36 MRIAVICFCLLGITCAIPVKQADSGSSEEKQLYNKYPDAVATWLNPDPSQKQNLLAPQ--
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB3 VSSEETNDFKQETLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
                   ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 ------------TLPSKSNESHDHMDDMDDEDDDDHVDSQDSIDSNDSDDVDDTDDSHQS
                   60        70        80        90       100      

              130       140       150       160       170       180
pF1KB3 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 DESHHSDESDELVTDFPTDLPATEVFTPVVPTVDTYDGRGDSVVYGLRSKSKKFRRPDIQ
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KB3 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 YPDATDEDITSHMESEELNGAYKAIPVAQDLNAPSDWDSRGKDSYETSQLDDQSAETHSH
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KB3 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 KQSRLYKRKANDESNEHSDVIDSQELSKVSREFHSHEFHSHEDMLVVDPKSKEEDKHLKF
        230       240       250       260       270       280      

              310    
pF1KB3 RISHELDSASSEVN
       ::::::::::::::
CCDS36 RISHELDSASSEVN
        290       300




314 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:58:18 2016 done: Sat Nov  5 00:58:18 2016
 Total Scan time:  2.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]