Result of FASTA (ccds) for
pF1KB3655
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3655, 561 aa
1>>>pF1KB3655 561 - 561 aa - 561 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1582+/-0.00108; mu= 19.2600+/- 0.065
mean_var=63.4662+/-12.824, 0's: 0 Z-trim(102.7): 34 B-trim: 421 in 1/48
Lambda= 0.160992
statistics sampled from 7057 (7068) to 7057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.566), E-opt: 0.2 (0.217), width: 16
Scan time: 2.840
The best scores are: opt bits E(32554)
CCDS8805.1 SLC11A2 gene_id:4891|Hs108|chr12 ( 561) 3668 861.2 0
CCDS53793.1 SLC11A2 gene_id:4891|Hs108|chr12 ( 590) 3668 861.2 0
CCDS53791.1 SLC11A2 gene_id:4891|Hs108|chr12 ( 557) 3588 842.6 0
CCDS53792.1 SLC11A2 gene_id:4891|Hs108|chr12 ( 568) 3563 836.8 0
CCDS2415.1 SLC11A1 gene_id:6556|Hs108|chr2 ( 550) 2325 549.2 4.6e-156
>>CCDS8805.1 SLC11A2 gene_id:4891|Hs108|chr12 (561 aa)
initn: 3668 init1: 3668 opt: 3668 Z-score: 4601.0 bits: 861.2 E(32554): 0
Smith-Waterman score: 3668; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:1-561)
10 20 30 40 50 60
pF1KB3 MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 EYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 PLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 FVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 CIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 CIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 VVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 VVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 GILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 GILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDC
490 500 510 520 530 540
550 560
pF1KB3 GHTVSISKGLLTEEATRGYVK
:::::::::::::::::::::
CCDS88 GHTVSISKGLLTEEATRGYVK
550 560
>>CCDS53793.1 SLC11A2 gene_id:4891|Hs108|chr12 (590 aa)
initn: 3668 init1: 3668 opt: 3668 Z-score: 4600.7 bits: 861.2 E(32554): 0
Smith-Waterman score: 3668; 100.0% identity (100.0% similar) in 561 aa overlap (1-561:30-590)
10 20 30
pF1KB3 MVLGPEQKMSDDSVSGDHGESASLGNINPAY
:::::::::::::::::::::::::::::::
CCDS53 MRKKQLKTEAAPHCELKSYSKNSATQVSTMVLGPEQKMSDDSVSGDHGESASLGNINPAY
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 SNPSLSQSPGDSEEYFATYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SNPSLSQSPGDSEEYFATYFNEKISIPEEEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIE
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 SDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SDLQSGAVAGFKLLWILLLATLVGLLLQRLAARLGVVTGLHLAEVCHRQYPKVPRVILWL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 MVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MVELAIIGSDMQEVIGSAIAINLLSVGRIPLWGGVLITIADTFVFLFLDKYGLRKLEAFF
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 GFLITIMALTFGYEYVTVKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GFLITIMALTFGYEYVTVKPSQSQVLKGMFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 HSALVKSRQVNRNNKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HSALVKSRQVNRNNKQEVREANKYFFIESCIALFVSFIINVFVVSVFAEAFFGKTNEQVV
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB3 EVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EVCTNTSSPHAGLFPKDNSTLAVDIYKGGVVLGCYFGPAALYIWAVGILAAGQSSTMTGT
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB3 YSGQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 YSGQFVMEGFLNLKWSRFARVVLTRSIAIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB3 FALIPILTFTSLRPVMSDFANGLGWRIAGGILVLIICSINMYFVVVYVRDLGHVALYVVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FALIPILTFTSLRPVMSDFANGLGWRIAGGILVLIICSINMYFVVVYVRDLGHVALYVVA
490 500 510 520 530 540
520 530 540 550 560
pF1KB3 AVVSVAYLGFVFYLGWQCLIALGMSFLDCGHTVSISKGLLTEEATRGYVK
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AVVSVAYLGFVFYLGWQCLIALGMSFLDCGHTVSISKGLLTEEATRGYVK
550 560 570 580 590
>>CCDS53791.1 SLC11A2 gene_id:4891|Hs108|chr12 (557 aa)
initn: 3588 init1: 3588 opt: 3588 Z-score: 4500.6 bits: 842.6 E(32554): 0
Smith-Waterman score: 3588; 99.8% identity (100.0% similar) in 550 aa overlap (12-561:8-557)
10 20 30 40 50 60
pF1KB3 MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEE
.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MSTVDYLNSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEE
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 EYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQR
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 LAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 PLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 FVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIES
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB3 CIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGG
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB3 VVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB3 IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAG
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB3 GILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDC
480 490 500 510 520 530
550 560
pF1KB3 GHTVSISKGLLTEEATRGYVK
:::::::::::::::::::::
CCDS53 GHTVSISKGLLTEEATRGYVK
540 550
>>CCDS53792.1 SLC11A2 gene_id:4891|Hs108|chr12 (568 aa)
initn: 3563 init1: 3563 opt: 3563 Z-score: 4469.1 bits: 836.8 E(32554): 0
Smith-Waterman score: 3563; 100.0% identity (100.0% similar) in 543 aa overlap (1-543:1-543)
10 20 30 40 50 60
pF1KB3 MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEYFATYFNEKISIPEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGRI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 PLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 PLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKGM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 FVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 FVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIES
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 CIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 CIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTSSPHAGLFPKDNSTLAVDIYKGG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 VVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSIAI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 IPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRIAG
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 GILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFLDC
490 500 510 520 530 540
550 560
pF1KB3 GHTVSISKGLLTEEATRGYVK
:::
CCDS53 GHTCHLGLTAQPELYLLNTMDADSLVSR
550 560
>>CCDS2415.1 SLC11A1 gene_id:6556|Hs108|chr2 (550 aa)
initn: 2280 init1: 1437 opt: 2325 Z-score: 2915.3 bits: 549.2 E(32554): 4.6e-156
Smith-Waterman score: 2325; 63.6% identity (84.6% similar) in 547 aa overlap (14-558:1-546)
10 20 30 40 50
pF1KB3 MVLGPEQKMSDDSVSGDHGESASLGNINPAYSNPSLSQSPGDSEEY-FATYFNEKISIPE
..::.: . :. . :.:. ::: .. ::..::: ::.
CCDS24 MTGDKGPQRLSGSSYGSISSPTSPTSPGPQQAPPRETYLSEKIPIPD
10 20 30 40
60 70 80 90 100 110
pF1KB3 EEYSCFSFRKLWAFTGPGFLMSIAYLDPGNIESDLQSGAVAGFKLLWILLLATLVGLLLQ
. . ::.::::::::::::::::.:::::::::::.::::::::::.:: ::..::: :
CCDS24 TKPGTFSLRKLWAFTGPGFLMSIAFLDPGNIESDLQAGAVAGFKLLWVLLWATVLGLLCQ
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB3 RLAARLGVVTGLHLAEVCHRQYPKVPRVILWLMVELAIIGSDMQEVIGSAIAINLLSVGR
::::::::::: :.:::: ::::::..::: .::::.:::::::::.:::.::::.::
CCDS24 RLAARLGVVTGKDLGEVCHLYYPKVPRTVLWLTIELAIVGSDMQEVIGTAIAFNLLSAGR
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB3 IPLWGGVLITIADTFVFLFLDKYGLRKLEAFFGFLITIMALTFGYEYVTVKPSQSQVLKG
:::::::::::.::: :::::.:::::::::::.::::::::::::::...: :. .:.:
CCDS24 IPLWGGVLITIVDTFFFLFLDNYGLRKLEAFFGLLITIMALTFGYEYVVARPEQGALLRG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB3 MFVPSCSGCRTPQIEQAVGIVGAVIMPHNMYLHSALVKSRQVNRNNKQEVREANKYFFIE
.:.::: :: :.. ::::::::.:::::.::::::::::...: . ..:::: ::.::
CCDS24 LFLPSCPGCGHPELLQAVGIVGAIIMPHNIYLHSALVKSREIDRARRADIREANMYFLIE
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB3 SCIALFVSFIINVFVVSVFAEAFFGKTNEQVVEVCTNTS-SPHAGLFPKDNSTLAVDIYK
. ::: ::::::.::..::..::. :::. . ..:.:.: .: .:: .:.:.:::::.
CCDS24 ATIALSVSFIINLFVMAVFGQAFYQKTNQAAFNICANSSLHDYAKIFPMNNATVAVDIYQ
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB3 GGVVLGCYFGPAALYIWAVGILAAGQSSTMTGTYSGQFVMEGFLNLKWSRFARVVLTRSI
:::.::: ::::::::::.:.:::::::::::::.::::::::: :.:::::::.::::
CCDS24 GGVILGCLFGPAALYIWAIGLLAAGQSSTMTGTYAGQFVMEGFLRLRWSRFARVLLTRSC
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB3 AIIPTLLVAVFQDVEHLTGMNDFLNVLQSLQLPFALIPILTFTSLRPVMSDFANGLGWRI
::.::.:::::.:.. :.:.::.::::::: ::::..:::::::. .:..::::: ..
CCDS24 AILPTVLVAVFRDLRDLSGLNDLLNVLQSLLLPFAVLPILTFTSMPTLMQEFANGLLNKV
410 420 430 440 450 460
480 490 500 510 520 530
pF1KB3 AGGILVLIICSINMYFVVVYVRDLGHVALYVVAAVVSVAYLGFVFYLGWQCLIALGMSFL
. . .....:.::.:::: :. .: : : . .::....::::. :: : : .: : .::
CCDS24 VTSSIMVLVCAINLYFVVSYLPSLPHPAYFGLAALLAAAYLGLSTYLVWTCCLAHGATFL
470 480 490 500 510 520
540 550 560
pF1KB3 DCGHTVSISKGLLTEEATRGYVK
. . ::: :: .:
CCDS24 AHSSHHHFLYGLL-EEDQKGETSG
530 540 550
561 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:17:52 2016 done: Sat Nov 5 05:17:53 2016
Total Scan time: 2.840 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]