Result of FASTA (ccds) for
pF1KB3707
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3707, 999 aa
1>>>pF1KB3707 999 - 999 aa - 999 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.8996+/-0.00112; mu= 1.6535+/- 0.068
mean_var=247.0204+/-48.695, 0's: 0 Z-trim(110.8): 28 B-trim: 0 in 0/53
Lambda= 0.081603
statistics sampled from 11893 (11914) to 11893 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.366), width: 16
Scan time: 4.940
The best scores are: opt bits E(32554)
CCDS8408.1 HYOU1 gene_id:10525|Hs108|chr11 ( 999) 6453 773.7 0
CCDS73559.1 HSPH1 gene_id:10808|Hs108|chr13 ( 782) 463 68.4 6.5e-11
>>CCDS8408.1 HYOU1 gene_id:10525|Hs108|chr11 (999 aa)
initn: 6453 init1: 6453 opt: 6453 Z-score: 4119.1 bits: 773.7 E(32554): 0
Smith-Waterman score: 6453; 100.0% identity (100.0% similar) in 999 aa overlap (1-999:1-999)
10 20 30 40 50 60
pF1KB3 MADKVRRQRPRRRVCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 MADKVRRQRPRRRVCWALVAVLLADLLALSDTLAVMSVDLGSESMKVAIVKPGVPMEIVL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 NKESRRKTPVIVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQADNPHVALYQARF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NKESRRKTPVIVTLKENERFFGDSAASMAIKNPKATLRYFQHLLGKQADNPHVALYQARF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PEHELTFDPQRQTVHFQISSQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 PEHELTFDPQRQTVHFQISSQLQFSPEEVLGMVLNYSRSLAEDFAEQPIKDAVITVPVFF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 NQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGSGSTVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 NQAERRAVLQAARMAGLKVLQLINDNTATALSYGVFRRKDINTTAQNIMFYDMGSGSTVC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFNEQRKGQRAKDVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 TIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFNEQRKGQRAKDVR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 ENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFERVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 ENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFERVP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 GPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGKNINADEAAAMGAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 GPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGKNINADEAAAMGAV
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 YQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKRVLFSRMGPYPQRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 YQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKRVLFSRMGPYPQRK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 VITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VITFNRYSHDFNFHINYGDLGFLGPEDLRVFGSQNLTTVKLKGVGDSFKKYPDYESKGIK
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 AHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 AHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLFGGGTTPDAKENGTDT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 VQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 VQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPEPKGDATPEGEKATEKENGDK
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 SEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 SEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVELVVLDLPDLPEDKLAQSV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 QKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 QKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVSTEEQREEISGKLSAAST
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 WLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 WLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLSALDNLLNHSSMFLKGAR
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 LIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 LIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEKPVLLSKDIEAKMMALDR
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 EVQYLLNKAKFTKPRPRPKDKNGTRAEPPLNASASDQGEKVIPPAGQTEDAEPISEPEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS84 EVQYLLNKAKFTKPRPRPKDKNGTRAEPPLNASASDQGEKVIPPAGQTEDAEPISEPEKV
910 920 930 940 950 960
970 980 990
pF1KB3 ETGSEPGDTEPLELGGPGAEPEQKEQSTGQKRPLKNDEL
:::::::::::::::::::::::::::::::::::::::
CCDS84 ETGSEPGDTEPLELGGPGAEPEQKEQSTGQKRPLKNDEL
970 980 990
>>CCDS73559.1 HSPH1 gene_id:10808|Hs108|chr13 (782 aa)
initn: 469 init1: 205 opt: 463 Z-score: 309.4 bits: 68.4 E(32554): 6.5e-11
Smith-Waterman score: 760; 27.9% identity (56.5% similar) in 703 aa overlap (259-940:144-774)
230 240 250 260 270 280
pF1KB3 MFYDMGSGSTVCTIVTYQMVKTKEAGMQPQLQIRGVGFDRTLGGLEMELRLRERLAGLFN
... :..:: ::: ... .: :.. . :.
CCDS73 FSVEQITAMLLTKLKETAENSLKKPVTDCVISVLGTAFDPFLGGKNFDEKLVEHFCAEFK
120 130 140 150 160 170
290 300 310 320 330 340
pF1KB3 EQRKGQRAKDVRENPRAMAKLLREANRLKTVLSANADHMA-QIEGLMDDVDFKAKVTRVE
. : :.. . ::. .: .: ..:: ..:.:. . .:: .:.: : ..:..: .
CCDS73 TKYK----LDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKDVSGKMNRSQ
180 190 200 210 220
350 360 370 380 390 400
pF1KB3 FEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATRVPRVQEVLLKAVGKEELGK
::::::.:.... :. . :.......... : .::::::.: :.: . : ::. ..
CCDS73 FEELCAELLQKIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFGKD-IST
230 240 250 260 270 280
410 420 430 440 450 460
pF1KB3 NINADEAAAMGAVYQAAALSKAFKVKPFVVRDAVVYPILVEFTREVEEEPGIHSLKHNKR
..:::::.: : . : : :: ::::. : : ::: .:: . .... :. :.: .
CCDS73 TLNADEAVARGCALQCAILSPAFKVREFSVTDAVPFPISLIWNHDSEDTEGVHEV-----
290 300 310 320 330 340
470 480 490 500 510 520
pF1KB3 VLFSRMGPYPQRKVITFNRYSHDFNFHINYGD-LGFLGPE-DLRVFGSQNLTTVKLKGVG
::: : ::.:: : . :... :.: : :: . : ::... :
CCDS73 --FSRNHAAPFSKVLTFLRRG-PFELEAFYSDPQGVPYPEAKIGRFVVQNVSAQK-----
350 360 370 380 390
530 540 550 560 570 580
pF1KB3 DSFKKYPDYESKGIKAHFNLDESGVLSLDRVESVFETLVEDSAEEESTLTKLGNTISSLF
: :.. .:.. .. :..... . ..:: ::. ... ..
CCDS73 -------DGEKSRVKVKVRVNTHGIFTISTA-----SMVEKVPTEENEMSSEADMECLNQ
400 410 420 430 440
590 600 610 620 630 640
pF1KB3 GGGTTPDAKENGTDTVQEEEESPAEGSKDEPGEQVELKEEAEAPVEDGSQPPPPE--PKG
.::. .: ::... .: : : ... .:. . ...:: :: .
CCDS73 RPPENPDTDKN----VQQDN--------SEAGTQPQVQTDAQ---QTSQSPPSPELTSEE
450 460 470 480
650 660 670 680 690 700
pF1KB3 DATPEGEKATEKENGDKSEAQKPSEKAEAGPEGVAPAPEGEKKQKPARKRRMVEEIGVEL
. :...::.::. . ::.::. :. . . : . .: ..: .:
CCDS73 NKIPDADKANEKKVDQPPEAKKPKIKVV-------------NVELPIEAN-LVWQLGKDL
490 500 510 520 530
710 720 730 740 750 760
pF1KB3 VVLDLPDLPEDKLAQSVQKLQDLTLRDLEKQEREKAANSLEAFIFETQDKLYQPEYQEVS
:.. : :. .:: ::: ::. : :..: ...: .::: : :..
CCDS73 --LNMYIETEGKMI-----MQD----KLEK-ERNDAKNAVEEYVYEFRDKLCGP-YEKFI
540 550 560 570 580
770 780 790 800 810 820
pF1KB3 TEEQREEISGKLSAASTWLEDEGVGATTVMLKEKLAELRKLCQGLFFRVEERKKWPERLS
:...... :. . :: .:: . .:: :: :. . : .: .. :. .
CCDS73 CEQDHQNFLRLLTETEDWLYEEGEDQAKQAYVDKLEELMKIGTPVKVRFQEAEERPKMFE
590 600 610 620 630 640
830 840 850 860 870 880
pF1KB3 ALDNLLNHSSMFLKGARLIPEMDQIFTEVEMTTLEKVINETWAWKNATLAEQAKLPATEK
: . :.: . . : : . . : :: .:: .::. : : .. ::: .
CCDS73 ELGQRLQHYAKIAADFRNKDEKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQAKKSLDQD
650 660 670 680 690 700
890 900 910 920
pF1KB3 PVLLSKDIEAKMMALDREVQYLLN--KAKFTKPR----PR-P---------KDKNGTRAE
::. ...:..:. :. . ... : :. .:. : : .:::. ::
CCDS73 PVVRAQEIKTKIKELNNTCEPVVTQPKPKIESPKLERTPNGPNIDKKEEDLEDKNNFGAE
710 720 730 740 750 760
930 940 950 960 970 980
pF1KB3 PPLNASASDQGEKVIPPAGQTEDAEPISEPEKVETGSEPGDTEPLELGGPGAEPEQKEQS
:: . . .::
CCDS73 PPHQNGECYPNEKNSVNMDLD
770 780
999 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:46:34 2016 done: Thu Nov 3 13:46:35 2016
Total Scan time: 4.940 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]