Result of FASTA (ccds) for
pF1KB3758
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3758, 594 aa
1>>>pF1KB3758 594 - 594 aa - 594 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6206+/-0.000916; mu= 2.4718+/- 0.055
mean_var=284.8390+/-56.247, 0's: 0 Z-trim(115.1): 16 B-trim: 19 in 1/53
Lambda= 0.075993
statistics sampled from 15671 (15684) to 15671 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.482), width: 16
Scan time: 4.600
The best scores are: opt bits E(32554)
CCDS42339.1 HAP1 gene_id:9001|Hs108|chr17 ( 594) 3918 442.9 5.6e-124
CCDS42338.1 HAP1 gene_id:9001|Hs108|chr17 ( 602) 3892 440.0 4.1e-123
CCDS11406.1 HAP1 gene_id:9001|Hs108|chr17 ( 619) 2653 304.2 3.2e-82
>>CCDS42339.1 HAP1 gene_id:9001|Hs108|chr17 (594 aa)
initn: 3918 init1: 3918 opt: 3918 Z-score: 2339.3 bits: 442.9 E(32554): 5.6e-124
Smith-Waterman score: 3918; 99.3% identity (99.8% similar) in 594 aa overlap (1-594:1-594)
10 20 30 40 50 60
pF1KB3 MRPRRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGTQF
:::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS42 MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFLEAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS42 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFSEAS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAEELRTSLRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAEELRTSLRR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 MISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIMRGEDFTPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIMRGEDFTPA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 EELVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVTSALEASGL
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 EEFVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVTSALEASGL
490 500 510 520 530 540
550 560 570 580 590
pF1KB3 GPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSSCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSSCR
550 560 570 580 590
>>CCDS42338.1 HAP1 gene_id:9001|Hs108|chr17 (602 aa)
initn: 2676 init1: 2676 opt: 3892 Z-score: 2323.8 bits: 440.0 E(32554): 4.1e-123
Smith-Waterman score: 3892; 98.0% identity (98.5% similar) in 602 aa overlap (1-594:1-602)
10 20 30 40 50 60
pF1KB3 MRPRRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGTQF
:::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS42 MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
130 140 150 160 170 180
190 200 210 220 230
pF1KB3 LEE--------LLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALL
::: :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LEEVCTAFLIQLLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 GSAKEEILYLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GSAKEEILYLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAH
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 PCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILEC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 PCDAPKLISQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILEC
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB3 VEQFLEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAE
:::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 VEQFSEASQQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMETLPGFQETLAE
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB3 ELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQVRGFEAEEGLMLAADIM
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 RGEDFTPAEELVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVT
::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 RGEDFTPAEEFVPQEELGAAKKVPAEEGVMEEAELVSEETEGWEEVELELDEATRMNVVT
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 SALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGECPHGALPAASRTSCRSS
550 560 570 580 590 600
pF1KB3 CR
::
CCDS42 CR
>>CCDS11406.1 HAP1 gene_id:9001|Hs108|chr17 (619 aa)
initn: 3904 init1: 2631 opt: 2653 Z-score: 1589.5 bits: 304.2 E(32554): 3.2e-82
Smith-Waterman score: 3858; 95.3% identity (95.8% similar) in 619 aa overlap (1-594:1-619)
10 20 30 40 50 60
pF1KB3 MRPRRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGTQF
:::.:::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS11 MRPKRLGRCCAGSRLGPGDPAALTCAPSPSASPAPEPSAQPQARGTGQRVGSRATSGSQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSEARTGARPASEAGAKAGARRPSAFSAIQGDVRSMPDNSDAPWTRFVFQGPFGSRATGR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GTGKAAGIWKTPAAYVGRRPGVSGPERAAFIRELEEALCPNLPPPVKKITQEDVKVMLYL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEELLPPVWESVTYGMVLQRERDLNTAARIGQSLVKQNSVLMEENSKLEALLGSAKEEIL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YLRHQVNLRDELLQLYSDSDEEDEDEEEEEEEKEAEEEQEEEEAEEDLQCAHPCDAPKLI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFLEAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS11 SQEALLHQHHCPQLEALQEKLRLLEEENHQLREEASQLDTLEDEEQMLILECVEQFSEAS
310 320 330 340 350 360
370 380 390 400
pF1KB3 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRM--------------------
::::::::::::::::::::::::::::::::::::::::
CCDS11 QQMAELSEVLVLRLENYERQQQEVARLQAQVLKLQQRCRMYGAETEKLQKQLASEKEIQM
370 380 390 400 410 420
410 420 430 440 450
pF1KB3 -----ETLPGFQETLAEELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QLQEEETLPGFQETLAEELRTSLRRMISDPVYFMERNYEMPRGDTSSLRYDFRYSEDREQ
430 440 450 460 470 480
460 470 480 490 500 510
pF1KB3 VRGFEAEEGLMLAADIMRGEDFTPAEELVPQEELGAAKKVPAEEGVMEEAELVSEETEGW
:::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::
CCDS11 VRGFEAEEGLMLAADIMRGEDFTPAEEFVPQEELGAAKKVPAEEGVMEEAELVSEETEGW
490 500 510 520 530 540
520 530 540 550 560 570
pF1KB3 EEVELELDEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEVELELDEATRMNVVTSALEASGLGPSHLDMNYVLQQLANWQDAHYRRQLRWKMLQKGE
550 560 570 580 590 600
580 590
pF1KB3 CPHGALPAASRTSCRSSCR
:::::::::::::::::::
CCDS11 CPHGALPAASRTSCRSSCR
610
594 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:40:07 2016 done: Fri Nov 4 02:40:08 2016
Total Scan time: 4.600 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]