FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3767, 1093 aa
  1>>>pF1KB3767 1093 - 1093 aa - 1093 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.2967+/-0.00148; mu= -20.1864+/- 0.088
 mean_var=506.2984+/-106.415, 0's: 0 Z-trim(109.1): 172  B-trim: 0 in 0/54
 Lambda= 0.056999
 statistics sampled from 10557 (10674) to 10557 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.647), E-opt: 0.2 (0.328), width:  16
 Scan time:  5.690

The best scores are:                                      opt bits E(32554)
CCDS43105.1 TMF1 gene_id:7110|Hs108|chr3           (1093) 6807 575.8 1.8e-163


>>CCDS43105.1 TMF1 gene_id:7110|Hs108|chr3                (1093 aa)
 initn: 6807 init1: 6807 opt: 6807  Z-score: 3048.4  bits: 575.8 E(32554): 1.8e-163
Smith-Waterman score: 6807; 100.0% identity (100.0% similar) in 1093 aa overlap (1-1093:1-1093)

               10        20        30        40        50        60
pF1KB3 MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 TWGLKSNTEPQSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TWGLKSNTEPQSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 KSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEET
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 VNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQKHEDRQSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 VNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQKHEDRQSN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 TPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETTDSKSSLHLMQTSFQLLSASA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETTDSKSSLHLMQTSFQLLSASA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 CPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGKGYALVPIIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 CPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGKGYALVPIIV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 NSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB3 QTVLDKVAEQCEPAESQPEALSEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QTVLDKVAEQCEPAESQPEALSEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB3 NLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELATRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 NLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELATRLN
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB3 SSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKEL
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB3 EEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAAL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB3 DSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQVGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQVGD
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB3 LRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQA
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB3 TLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSLLRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSLLRQ
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB3 ENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEMERM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEMERM
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KB3 KVEQERKKAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESHDHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KVEQERKKAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESHDHS
              910       920       930       940       950       960

              970       980       990      1000      1010      1020
pF1KB3 FGPMPISANGSNLYDAVRMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIMAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FGPMPISANGSNLYDAVRMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIMAEE
              970       980       990      1000      1010      1020

             1030      1040      1050      1060      1070      1080
pF1KB3 LVKLTNQNDELEEKVKEIPKLRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LVKLTNQNDELEEKVKEIPKLRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMY
             1030      1040      1050      1060      1070      1080

             1090   
pF1KB3 KTQIDELLRQSLS
       :::::::::::::
CCDS43 KTQIDELLRQSLS
             1090   




1093 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:56:51 2016 done: Thu Nov  3 13:56:52 2016
 Total Scan time:  5.690 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]