Result of FASTA (omim) for
pF1KB3767
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3767, 1093 aa
1>>>pF1KB3767 1093 - 1093 aa - 1093 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 16.6649+/-0.000613; mu= -33.8577+/- 0.038
mean_var=682.1994+/-138.396, 0's: 0 Z-trim(117.0): 292 B-trim: 0 in 0/60
Lambda= 0.049104
statistics sampled from 28360 (28611) to 28360 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.335), width: 16
Scan time: 15.740
The best scores are: opt bits E(85289)
NP_009045 (OMIM: 601126) TATA element modulatory f (1093) 6807 499.0 6.4e-140
XP_011532358 (OMIM: 601126) PREDICTED: TATA elemen (1096) 6791 497.8 1.4e-139
>>NP_009045 (OMIM: 601126) TATA element modulatory facto (1093 aa)
initn: 6807 init1: 6807 opt: 6807 Z-score: 2633.0 bits: 499.0 E(85289): 6.4e-140
Smith-Waterman score: 6807; 100.0% identity (100.0% similar) in 1093 aa overlap (1-1093:1-1093)
10 20 30 40 50 60
pF1KB3 MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TWGLKSNTEPQSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TWGLKSNTEPQSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQKHEDRQSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 VNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQKHEDRQSN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETTDSKSSLHLMQTSFQLLSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETTDSKSSLHLMQTSFQLLSASA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 CPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGKGYALVPIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 CPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGKGYALVPIIV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 NSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 QTVLDKVAEQCEPAESQPEALSEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 QTVLDKVAEQCEPAESQPEALSEKEDVCKTVEFLNEKLEKREAQLLSLSKEKALLEEAFD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 NLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELATRLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 NLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELATRLN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 SSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 SSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKVKEL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 EEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 EEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQAAL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 DSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQVGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 DSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQVGD
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 LRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIENLQA
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 TLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSLLRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 TLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSLLRQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 ENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEMERM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 ENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEMERM
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 KVEQERKKAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESHDHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 KVEQERKKAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESHDHS
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 FGPMPISANGSNLYDAVRMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIMAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FGPMPISANGSNLYDAVRMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIMAEE
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB3 LVKLTNQNDELEEKVKEIPKLRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 LVKLTNQNDELEEKVKEIPKLRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVKNMY
1030 1040 1050 1060 1070 1080
1090
pF1KB3 KTQIDELLRQSLS
:::::::::::::
NP_009 KTQIDELLRQSLS
1090
>>XP_011532358 (OMIM: 601126) PREDICTED: TATA element mo (1096 aa)
initn: 3952 init1: 3952 opt: 6791 Z-score: 2626.8 bits: 497.8 E(85289): 1.4e-139
Smith-Waterman score: 6791; 99.7% identity (99.7% similar) in 1096 aa overlap (1-1093:1-1096)
10 20 30 40 50 60
pF1KB3 MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSWFNASQLSSFAKQALSQAQKSIDRVLDIQEEEPSIWAETIPYGEPGISSPVSGGWDTS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 TWGLKSNTEPQSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TWGLKSNTEPQSPPIASPKAITKPVRRTVVDESENFFSAFLSPTDVQTIQKSPVVSKPPA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KSQRPEEEVKSSLHESLHIGQSRTPETTESQVKDSSLCVSGETLAAGTSSPKTEGKHEET
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQKHEDRQSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VNKESDMKVPTVSLKVSESVIDVKTTMESISNTSTQSLTAETKDIALEPKEQKHEDRQSN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 TPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETTDSKSSLHLMQTSFQLLSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TPSPPVSTFSSGTSTTSDIEVLDHESVISESSASSRQETTDSKSSLHLMQTSFQLLSASA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 CPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGKGYALVPIIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPEYNRLDDFQKLTESCCSSDAFERIDSFSVQSLDSRSVSEINSDDELSGKGYALVPIIV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 NSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NSSTPKSKTVESAEGKSEEVNETLVIPTEEAEMEESGRSATPVNCEQPDILVSSTPINEG
370 380 390 400 410 420
430 440 450 460 470
pF1KB3 QTVLDKVAEQCEPAESQPEALSEKEDVCK---TVEFLNEKLEKREAQLLSLSKEKALLEE
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::::
XP_011 QTVLDKVAEQCEPAESQPEALSEKEDVCKVTLTVEFLNEKLEKREAQLLSLSKEKALLEE
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB3 AFDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AFDNLKDEMFRVKEESSSISSLKDEFTQRIAEAEKKVQLACKERDAAKKEIKNIKEELAT
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB3 RLNSSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLNSSETADLLKEKDEQIRGLMEEGEKLSKQQLHNSNIIKKLRAKDKENENMVAKLNKKV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB3 KELEEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KELEEELQHLKQVLDGKEEVEKQHRENIKKLNSMVERQEKDLGRLQVDMDELEEKNRSIQ
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB3 AALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AALDSAYKELTDLHKANAAKDSEAQEAALSREMKAKEELSAALEKAQEEARQQQETLAIQ
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB3 VGDLRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VGDLRLALQRTEQAAARKEDYLRHEIGELQQRLQEAENRNQELSQSVSSTTRPLLRQIEN
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB3 LQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQATLGSQTSSWEKLEKNLSDRLGESQTLLAAAVERERAATEELLANKIQMSSMESQNSL
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB3 LRQENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRQENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRKEKTLLNSQLEM
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB3 ERMKVEQERKKAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERMKVEQERKKAIFTQETIKEKERKPFSVSSTPTMSRSSSISGVDMAGLQTSFLSQDESH
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB3 DHSFGPMPISANGSNLYDAVRMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DHSFGPMPISANGSNLYDAVRMGAGSSIIENLQSQLKLREGEITHLQLEIGNLEKTRSIM
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB3 AEELVKLTNQNDELEEKVKEIPKLRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEELVKLTNQNDELEEKVKEIPKLRTQLRDLDQRYNTILQMYGEKAEEAEELRLDLEDVK
1030 1040 1050 1060 1070 1080
1080 1090
pF1KB3 NMYKTQIDELLRQSLS
::::::::::::::::
XP_011 NMYKTQIDELLRQSLS
1090
1093 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:56:53 2016 done: Thu Nov 3 13:56:55 2016
Total Scan time: 15.740 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]