FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3778, 243 aa
  1>>>pF1KB3778 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.4749+/-0.000848; mu= -6.3292+/- 0.052
 mean_var=301.8176+/-60.026, 0's: 0 Z-trim(117.1): 16  B-trim: 0 in 0/55
 Lambda= 0.073825
 statistics sampled from 17739 (17751) to 17739 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.545), width:  16
 Scan time:  2.790

The best scores are:                                      opt bits E(32554)
CCDS30987.1 NUCKS1 gene_id:64710|Hs108|chr1        ( 243) 1608 183.4 1.2e-46


>>CCDS30987.1 NUCKS1 gene_id:64710|Hs108|chr1             (243 aa)
 initn: 1608 init1: 1608 opt: 1608  Z-score: 950.8  bits: 183.4 E(32554): 1.2e-46
Smith-Waterman score: 1608; 100.0% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KB3 MSRPVRNRKVVDYSQFQESDDADEDYGRDSGPPTKKIRSSPREAKNKRRSGKNSQEDSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MSRPVRNRKVVDYSQFQESDDADEDYGRDSGPPTKKIRSSPREAKNKRRSGKNSQEDSED
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SEDKDVKTKKDDSHSAEDSEDEKEDHKNVRQQRQAASKAASKQREMLMEDVGSEEEQEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SEDKDVKTKKDDSHSAEDSEDEKEDHKNVRQQRQAASKAASKQREMLMEDVGSEEEQEEE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 DEAPFQEKDSGSDEDFLMEDDDDSDYGSSKKKNKKMVKKSKPERKEKKMPKPRLKATVTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DEAPFQEKDSGSDEDFLMEDDDDSDYGSSKKKNKKMVKKSKPERKEKKMPKPRLKATVTP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 SPVKGKGKVGRPTASKASKEKTPSPKEEDEEPESPPEKKTSTSPPPEKSGDEGSEDEAPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SPVKGKGKVGRPTASKASKEKTPSPKEEDEEPESPPEKKTSTSPPPEKSGDEGSEDEAPS
              190       200       210       220       230       240

          
pF1KB3 GED
       :::
CCDS30 GED
          




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:22:50 2016 done: Sat Nov  5 05:22:50 2016
 Total Scan time:  2.790 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]