Result of FASTA (omim) for pF1KB3797
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3797, 474 aa
  1>>>pF1KB3797 474 - 474 aa - 474 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7419+/-0.000495; mu= 15.2399+/- 0.031
 mean_var=72.5908+/-14.912, 0's: 0 Z-trim(107.7): 154  B-trim: 22 in 1/50
 Lambda= 0.150534
 statistics sampled from 15601 (15760) to 15601 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.536), E-opt: 0.2 (0.185), width:  16
 Scan time:  5.880

The best scores are:                                      opt bits E(85289)
NP_000804 (OMIM: 600232) gamma-aminobutyric acid r ( 474) 3136 691.1 1.7e-198
NP_000805 (OMIM: 137192,612269,617113) gamma-amino ( 473) 2552 564.3 2.6e-160
NP_000803 (OMIM: 137190,617153) gamma-aminobutyric ( 474) 2518 556.9 4.4e-158
NP_068712 (OMIM: 137192,612269,617113) gamma-amino ( 473) 2485 549.7 6.3e-156
NP_068711 (OMIM: 600232) gamma-aminobutyric acid r ( 512) 2382 527.4 3.6e-149
XP_011519730 (OMIM: 137192,612269,617113) PREDICTE ( 414) 2147 476.3  7e-134
NP_001178250 (OMIM: 137192,612269,617113) gamma-am ( 402) 2146 476.1 7.9e-134
NP_001265560 (OMIM: 137192,612269,617113) gamma-am ( 388) 2115 469.3 8.1e-132
NP_001178249 (OMIM: 137192,612269,617113) gamma-am ( 388) 2115 469.3 8.1e-132
XP_016863474 (OMIM: 137190,617153) PREDICTED: gamm ( 257) 1245 280.3 4.3e-75
XP_011529486 (OMIM: 300349) PREDICTED: gamma-amino ( 406) 1227 276.5 9.6e-74
NP_061028 (OMIM: 300349) gamma-aminobutyric acid r ( 632) 1227 276.6 1.4e-73
NP_000806 (OMIM: 137163,613060) gamma-aminobutyric ( 452) 1090 246.8 9.5e-65
XP_011539496 (OMIM: 137163,613060) PREDICTED: gamm ( 465) 1090 246.8 9.8e-65
XP_016856425 (OMIM: 137163,613060) PREDICTED: gamm ( 687) 1090 246.8 1.4e-64
NP_001243632 (OMIM: 137161) gamma-aminobutyric aci ( 462) 1031 234.0   7e-61
NP_002033 (OMIM: 137161) gamma-aminobutyric acid r ( 479) 1031 234.0 7.2e-61
XP_016866178 (OMIM: 137161) PREDICTED: gamma-amino ( 392) 1021 231.8 2.7e-60
NP_001243633 (OMIM: 137161) gamma-aminobutyric aci ( 392) 1021 231.8 2.7e-60
NP_001254511 (OMIM: 137161) gamma-aminobutyric aci ( 392) 1021 231.8 2.7e-60
NP_002034 (OMIM: 137162) gamma-aminobutyric acid r ( 465) 1003 227.9 4.8e-59
NP_055026 (OMIM: 602729) gamma-aminobutyric acid r ( 440)  998 226.8 9.6e-59
XP_011534015 (OMIM: 137162) PREDICTED: gamma-amino ( 421)  960 218.5 2.8e-56
XP_006724550 (OMIM: 305990) PREDICTED: glycine rec ( 436)  948 215.9 1.8e-55
XP_011543798 (OMIM: 305990) PREDICTED: glycine rec ( 436)  948 215.9 1.8e-55
XP_011543797 (OMIM: 305990) PREDICTED: glycine rec ( 436)  948 215.9 1.8e-55
NP_001112357 (OMIM: 305990) glycine receptor subun ( 452)  947 215.7 2.1e-55
NP_002054 (OMIM: 305990) glycine receptor subunit  ( 452)  947 215.7 2.1e-55
NP_001112358 (OMIM: 305990) glycine receptor subun ( 452)  945 215.3 2.9e-55
XP_016884916 (OMIM: 305990) PREDICTED: glycine rec ( 452)  945 215.3 2.9e-55
NP_000162 (OMIM: 138491,149400) glycine receptor s ( 449)  943 214.8 3.9e-55
XP_016864838 (OMIM: 138491,149400) PREDICTED: glyc ( 465)  942 214.6 4.6e-55
NP_001036008 (OMIM: 600421) glycine receptor subun ( 449)  940 214.2 6.1e-55
NP_001139512 (OMIM: 138491,149400) glycine recepto ( 457)  940 214.2 6.2e-55
NP_006520 (OMIM: 600421) glycine receptor subunit  ( 464)  940 214.2 6.2e-55
NP_000807 (OMIM: 137164,607681,611277) gamma-amino ( 467)  933 212.7 1.8e-54
NP_944494 (OMIM: 137164,607681,611277) gamma-amino ( 475)  933 212.7 1.8e-54
XP_016864119 (OMIM: 600421) PREDICTED: glycine rec ( 424)  929 211.8   3e-54
NP_775807 (OMIM: 137166) gamma-aminobutyric acid r ( 465)  896 204.6 4.7e-52
XP_011511977 (OMIM: 103780,137140) PREDICTED: gamm ( 511)  896 204.7 5.1e-52
NP_001317619 (OMIM: 103780,137140) gamma-aminobuty ( 511)  896 204.7 5.1e-52
NP_150092 (OMIM: 600233) gamma-aminobutyric acid r ( 467)  895 204.4 5.5e-52
XP_011519732 (OMIM: 600233) PREDICTED: gamma-amino ( 473)  895 204.4 5.5e-52
NP_000815 (OMIM: 138492,614619) glycine receptor s ( 497)  894 204.2 6.7e-52
NP_001159532 (OMIM: 138492,614619) glycine recepto ( 497)  894 204.2 6.7e-52
NP_001107647 (OMIM: 103780,137140) gamma-aminobuty ( 451)  886 202.5 2.1e-51
NP_000798 (OMIM: 103780,137140) gamma-aminobutyric ( 451)  886 202.5 2.1e-51
XP_016863472 (OMIM: 103780,137140) PREDICTED: gamm ( 451)  886 202.5 2.1e-51
XP_016863471 (OMIM: 103780,137140) PREDICTED: gamm ( 451)  886 202.5 2.1e-51
XP_016863475 (OMIM: 137190,617153) PREDICTED: gamm ( 247)  881 201.3 2.6e-51


>>NP_000804 (OMIM: 600232) gamma-aminobutyric acid recep  (474 aa)
 initn: 3136 init1: 3136 opt: 3136  Z-score: 3684.5  bits: 691.1 E(85289): 1.7e-198
Smith-Waterman score: 3136; 100.0% identity (100.0% similar) in 474 aa overlap (1-474:1-474)

               10        20        30        40        50        60
pF1KB3 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKM
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB3 DPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALER
              370       380       390       400       410       420

              430       440       450       460       470    
pF1KB3 HVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 HVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
              430       440       450       460       470    

>>NP_000805 (OMIM: 137192,612269,617113) gamma-aminobuty  (473 aa)
 initn: 2120 init1: 2120 opt: 2552  Z-score: 2999.1  bits: 564.3 E(85289): 2.6e-160
Smith-Waterman score: 2552; 79.8% identity (92.4% similar) in 475 aa overlap (1-474:1-473)

               10        20         30        40        50         
pF1KB3 MWRVRKRGYFGIWSFPLIIAAVC-AQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPP
       :: .     :::.: :...:.:: :::::::.:::.::::::.:::::::::::::::::
NP_000 MWGLAGGRLFGIFSAPVLVAVVCCAQSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPP
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB3 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPD
       : :::::::::::::::::::::::::::: ::::::.:. :::::::::::::::::::
NP_000 VCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPD
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB3 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB3 SYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLK
       ::::::::::::::: :.::::: .:::::::::...:....:::.::.::::::::.::
NP_000 SYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLK
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB3 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK
       ::::::::::::::::::.::::::.::::::::::::::: :::.:.:.:.. . . :.
NP_000 PYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNR
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 MDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALE
       .: : ::::..::..:::  .:.  :.:: :.. ...: :.::::: ..::.. ::   .
NP_000 VDAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHGRFLGD
              370         380       390       400       410        

     420       430       440       450       460       470    
pF1KB3 RHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       : . .::..::::.::::: :::::::::::::::: :: .::.::.::::::::
NP_000 RSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
      420       430       440       450       460       470   

>>NP_000803 (OMIM: 137190,617153) gamma-aminobutyric aci  (474 aa)
 initn: 2446 init1: 2152 opt: 2518  Z-score: 2959.1  bits: 556.9 E(85289): 4.4e-158
Smith-Waterman score: 2518; 78.8% identity (92.2% similar) in 477 aa overlap (1-474:1-474)

               10        20         30        40        50         
pF1KB3 MWRVRKRGYFGIWSFPLIIAAVC-AQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPP
       :: :..:  .:. :::..:. :: :.:.:.::::: ::::::::::::::::::::::::
NP_000 MWTVQNRESLGLLSFPVMITMVCCAHSTNEPSNMSYVKETVDRLLKGYDIRLRPDFGGPP
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB3 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPD
       : ::: ::.:::::::::::::::::::::.:.::::::. :::::::::::::::::::
NP_000 VDVGMRIDVASIDMVSEVNMDYTLTMYFQQSWKDKRLSYSGIPLNLTLDNRVADQLWVPD
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB3 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB3 SYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLK
       ::::::::::::: : ..:::::.:::::::::::::...::: :.::.::::::::.::
NP_000 SYGYTTDDIEFYWNGGEGAVTGVNKIELPQFSIVDYKMVSKKVEFTTGAYPRLSLSFRLK
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB3 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI
       :::::::::::::: ::::::::::::::::::::::::::::::::::.::::::::::
NP_000 RNIGYFILQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKI
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK
       :::::::.::::::::::.::::::.:::::::.:::  ::.: :  .. ::: .:..::
NP_000 PYVKAIDIYLMGCFVFVFLALLEYAFVNYIFFGKGPQ--KKGASKQDQSANEKNKLEMNK
              310       320       330         340       350        

     360         370       380       390       400       410       
pF1KB3 M--DPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNA
       .  : : :::::::::.:: . ::.. ...::..:: .::..::::::    :...:: :
NP_000 VQVDAHGNILLSTLEIRNETSGSEVLTSVSDPKATMYSYDSASIQYRKPLSSREAYGR-A
      360       370       380       390       400       410        

       420       430       440       450       460       470    
pF1KB3 LERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       :.:: . .:.:.::::::::. ::::::::.::.:::.:::..::.::.:::::::.
NP_000 LDRHGVPSKGRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNVVYWLYYVH
       420       430       440       450       460       470    

>>NP_068712 (OMIM: 137192,612269,617113) gamma-aminobuty  (473 aa)
 initn: 2089 init1: 2089 opt: 2485  Z-score: 2920.4  bits: 549.7 E(85289): 6.3e-156
Smith-Waterman score: 2485; 80.0% identity (92.2% similar) in 464 aa overlap (12-474:12-473)

               10         20        30        40        50         
pF1KB3 MWRVRKRGYFGIW-SFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPP
                  :: :. :   .   .:::::.:::.::::::.:::::::::::::::::
NP_068 MCSGLLELLLPIWLSWTLGTRGSEPRSVNDPGNMSFVKETVDKLLKGYDIRLRPDFGGPP
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB3 VAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPD
       : :::::::::::::::::::::::::::: ::::::.:. :::::::::::::::::::
NP_068 VCVGMNIDIASIDMVSEVNMDYTLTMYFQQYWRDKRLAYSGIPLNLTLDNRVADQLWVPD
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KB3 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 TYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIE
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KB3 SYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLK
       ::::::::::::::: :.::::: .:::::::::...:....:::.::.::::::::.::
NP_068 SYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSLSFRLK
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KB3 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 RNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKI
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KB3 PYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK
       ::::::::::::::::::.::::::.::::::::::::::: :::.:.:.:.. . . :.
NP_068 PYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSKSESNR
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KB3 MDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALE
       .: : ::::..::..:::  .:.  :.:: :.. ...: :.::::: ..::.. ::   .
NP_068 VDAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHGRFLGD
              370         380       390       400       410        

     420       430       440       450       460       470    
pF1KB3 RHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       : . .::..::::.::::: :::::::::::::::: :: .::.::.::::::::
NP_068 RSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
      420       430       440       450       460       470   

>>NP_068711 (OMIM: 600232) gamma-aminobutyric acid recep  (512 aa)
 initn: 3124 init1: 2382 opt: 2382  Z-score: 2799.0  bits: 527.4 E(85289): 3.6e-149
Smith-Waterman score: 3002; 92.5% identity (92.5% similar) in 506 aa overlap (1-468:1-506)

               10        20        30        40        50        60
pF1KB3 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MWRVRKRGYFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 AVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQLWVPDT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 YFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIES
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 YGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 NIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIP
              250       260       270       280       290       300

              310       320       330       340       350          
pF1KB3 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNK-
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: 
NP_068 YVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKI
              310       320       330       340       350       360

                                          360       370       380  
pF1KB3 -------------------------------------MDPHENILLSTLEIKNEMATSEA
                                            :::::::::::::::::::::::
NP_068 FYKDIKQNGTQYRSLWDPTGNLSPTRRTTNYDFSLYTMDPHENILLSTLEIKNEMATSEA
              370       380       390       400       410       420

            390       400       410       420       430       440  
pF1KB3 VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 VMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPD
              430       440       450       460       470       480

            450       460       470    
pF1KB3 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       ::::::::::::::::::::::::::      
NP_068 LTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
              490       500       510  

>>XP_011519730 (OMIM: 137192,612269,617113) PREDICTED: g  (414 aa)
 initn: 1756 init1: 1756 opt: 2147  Z-score: 2524.6  bits: 476.3 E(85289): 7e-134
Smith-Waterman score: 2147; 79.6% identity (92.7% similar) in 398 aa overlap (77-474:19-414)

         50        60        70        80        90       100      
pF1KB3 YDIRLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLT
                                     .  :::::::::: ::::::.:. ::::::
XP_011             MQIPSLCDCALLFGSCHIIAKDYTLTMYFQQYWRDKRLAYSGIPLNLT
                           10        20        30        40        

        110       120       130       140       150       160      
pF1KB3 LDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRR
       50        60        70        80        90       100        

        170       180       190       200       210       220      
pF1KB3 YPLDEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFST
       :::::::::::::::::::::::::::: :.::::: .:::::::::...:....:::.:
XP_011 YPLDEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFAT
      110       120       130       140       150       160        

        230       240       250       260       270       280      
pF1KB3 GSYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMT
       :.::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAYPRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMT
      170       180       190       200       210       220        

        290       300       310       320       330       340      
pF1KB3 TINTHLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAA
       :::::::::::::::::::::::::::::::.::::::.::::::::::::::: :::.:
XP_011 TINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTA
      230       240       250       260       270       280        

        350       360       370       380       390       400      
pF1KB3 SANNEKMRLDVNKMDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKA
       .:.:.. . . :..: : ::::..::..:::  .:.  :.:: :.. ...: :.::::: 
XP_011 KAKNDRSKSESNRVDAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQ
      290       300       310         320       330       340      

        410       420       430       440       450       460      
pF1KB3 GLPRHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNI
       ..::.. ::   .: . .::..::::.::::: :::::::::::::::: :: .::.::.
XP_011 SMPREGHGRFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNL
        350       360       370       380       390       400      

        470    
pF1KB3 VYWLYYVN
       ::::::::
XP_011 VYWLYYVN
        410    

>>NP_001178250 (OMIM: 137192,612269,617113) gamma-aminob  (402 aa)
 initn: 1755 init1: 1755 opt: 2146  Z-score: 2523.6  bits: 476.1 E(85289): 7.9e-134
Smith-Waterman score: 2146; 80.3% identity (93.2% similar) in 395 aa overlap (80-474:10-402)

      50        60        70        80        90       100         
pF1KB3 RLRPDFGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDN
                                     :::::::::: ::::::.:. :::::::::
NP_001                      MWATYQTEEDYTLTMYFQQYWRDKRLAYSGIPLNLTLDN
                                    10        20        30         

     110       120       130       140       150       160         
pF1KB3 RVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPL
      40        50        60        70        80        90         

     170       180       190       200       210       220         
pF1KB3 DEQNCTLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSY
       ::::::::::::::::::::::::: :.::::: .:::::::::...:....:::.::.:
NP_001 DEQNCTLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAY
     100       110       120       130       140       150         

     230       240       250       260       270       280         
pF1KB3 PRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTIN
       :::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRLSLSFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTIN
     160       170       180       190       200       210         

     290       300       310       320       330       340         
pF1KB3 THLRETLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASAN
       ::::::::::::::::::::::::::::.::::::.::::::::::::::: :::.:.:.
NP_001 THLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAK
     220       230       240       250       260       270         

     350       360       370       380       390       400         
pF1KB3 NEKMRLDVNKMDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLP
       :.. . . :..: : ::::..::..:::  .:.  :.:: :.. ...: :.::::: ..:
NP_001 NDRSKSESNRVDAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQSMP
     280       290       300         310       320       330       

     410       420       430       440       450       460         
pF1KB3 RHSFGRNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYW
       :.. ::   .: . .::..::::.::::: :::::::::::::::: :: .::.::.:::
NP_001 REGHGRFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYW
       340       350       360       370       380       390       

     470    
pF1KB3 LYYVN
       :::::
NP_001 LYYVN
       400  

>>NP_001265560 (OMIM: 137192,612269,617113) gamma-aminob  (388 aa)
 initn: 1724 init1: 1724 opt: 2115  Z-score: 2487.5  bits: 469.3 E(85289): 8.1e-132
Smith-Waterman score: 2115; 80.0% identity (93.1% similar) in 390 aa overlap (85-474:1-388)

           60        70        80        90       100       110    
pF1KB3 FGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQ
                                     ::::: ::::::.:. ::::::::::::::
NP_001                               MYFQQYWRDKRLAYSGIPLNLTLDNRVADQ
                                             10        20        30

          120       130       140       150       160       170    
pF1KB3 LWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KB3 TLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSL
       :::::::::::::::::::: :.::::: .:::::::::...:....:::.::.::::::
NP_001 TLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSL
              100       110       120       130       140       150

          240       250       260       270       280       290    
pF1KB3 SFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRE
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRE
              160       170       180       190       200       210

          300       310       320       330       340       350    
pF1KB3 TLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMR
       :::::::::::::::::::::::.::::::.::::::::::::::: :::.:.:.:.. .
NP_001 TLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSK
              220       230       240       250       260       270

          360       370       380       390       400       410    
pF1KB3 LDVNKMDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFG
        . :..: : ::::..::..:::  .:.  :.:: :.. ...: :.::::: ..::.. :
NP_001 SESNRVDAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHG
              280       290         300       310       320        

          420       430       440       450       460       470    
pF1KB3 RNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       :   .: . .::..::::.::::: :::::::::::::::: :: .::.::.::::::::
NP_001 RFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
      330       340       350       360       370       380        

>>NP_001178249 (OMIM: 137192,612269,617113) gamma-aminob  (388 aa)
 initn: 1724 init1: 1724 opt: 2115  Z-score: 2487.5  bits: 469.3 E(85289): 8.1e-132
Smith-Waterman score: 2115; 80.0% identity (93.1% similar) in 390 aa overlap (85-474:1-388)

           60        70        80        90       100       110    
pF1KB3 FGGPPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNLTLDNRVADQ
                                     ::::: ::::::.:. ::::::::::::::
NP_001                               MYFQQYWRDKRLAYSGIPLNLTLDNRVADQ
                                             10        20        30

          120       130       140       150       160       170    
pF1KB3 LWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC
               40        50        60        70        80        90

          180       190       200       210       220       230    
pF1KB3 TLEIESYGYTTDDIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSL
       :::::::::::::::::::: :.::::: .:::::::::...:....:::.::.::::::
NP_001 TLEIESYGYTTDDIEFYWRGGDKAVTGVERIELPQFSIVEHRLVSRNVVFATGAYPRLSL
              100       110       120       130       140       150

          240       250       260       270       280       290    
pF1KB3 SFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRE
       ::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SFRLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRE
              160       170       180       190       200       210

          300       310       320       330       340       350    
pF1KB3 TLPKIPYVKAIDMYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMR
       :::::::::::::::::::::::.::::::.::::::::::::::: :::.:.:.:.. .
NP_001 TLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKLAEKTAKAKNDRSK
              220       230       240       250       260       270

          360       370       380       390       400       410    
pF1KB3 LDVNKMDPHENILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFG
        . :..: : ::::..::..:::  .:.  :.:: :.. ...: :.::::: ..::.. :
NP_001 SESNRVDAHGNILLTSLEVHNEM--NEVSGGIGDTRNSAISFDNSGIQYRKQSMPREGHG
              280       290         300       310       320        

          420       430       440       450       460       470    
pF1KB3 RNALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       :   .: . .::..::::.::::: :::::::::::::::: :: .::.::.::::::::
NP_001 RFLGDRSLPHKKTHLRRRSSQLKIKIPDLTDVNAIDRWSRIVFPFTFSLFNLVYWLYYVN
      330       340       350       360       370       380        

>>XP_016863474 (OMIM: 137190,617153) PREDICTED: gamma-am  (257 aa)
 initn: 1229 init1: 935 opt: 1245  Z-score: 1469.1  bits: 280.3 E(85289): 4.3e-75
Smith-Waterman score: 1245; 72.3% identity (90.4% similar) in 260 aa overlap (217-474:1-257)

        190       200       210       220       230       240      
pF1KB3 DIEFYWRGDDNAVTGVTKIELPQFSIVDYKLITKKVVFSTGSYPRLSLSFKLKRNIGYFI
                                     ...::: :.::.::::::::.:::::::::
XP_016                               MVSKKVEFTTGAYPRLSLSFRLKRNIGYFI
                                             10        20        30

        250       260       270       280       290       300      
pF1KB3 LQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPYVKAID
       ::::::: ::::::::::::::::::::::::::::::::::.:::::::::::::::::
XP_016 LQTYMPSTLITILSWVSFWINYDASAARVALGITTVLTMTTISTHLRETLPKIPYVKAID
               40        50        60        70        80        90

        310       320       330       340       350       360      
pF1KB3 MYLMGCFVFVFMALLEYALVNYIFFGRGPQRQKKAAEKAASANNEKMRLDVNKM--DPHE
       .::::::::::.::::::.:::::::.:::  ::.: :  .. ::: .:..::.  : : 
XP_016 IYLMGCFVFVFLALLEYAFVNYIFFGKGPQ--KKGASKQDQSANEKNKLEMNKVQVDAHG
              100       110       120         130       140        

          370       380       390       400       410       420    
pF1KB3 NILLSTLEIKNEMATSEAVMGLGDPRSTMLAYDASSIQYRKAGLPRHSFGRNALERHVAQ
       :::::::::.:: . ::.. ...::..:: .::..::::::    :...:: ::.:: . 
XP_016 NILLSTLEIRNETSGSEVLTSVSDPKATMYSYDSASIQYRKPLSSREAYGR-ALDRHGVP
      150       160       170       180       190        200       

          430       440       450       460       470    
pF1KB3 KKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYVN
       .:.:.::::::::. ::::::::.::.:::.:::..::.::.:::::::.
XP_016 SKGRIRRRASQLKVKIPDLTDVNSIDKWSRMFFPITFSLFNVVYWLYYVH
       210       220       230       240       250       




474 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 13:58:21 2016 done: Thu Nov  3 13:58:22 2016
 Total Scan time:  5.880 Total Display time:  0.060

Function used was FASTA [36.3.4 Apr, 2011]
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