Result of FASTA (ccds) for
pF1KB3889
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3889, 808 aa
1>>>pF1KB3889 808 - 808 aa - 808 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2781+/-0.00116; mu= 10.1758+/- 0.068
mean_var=150.2546+/-32.891, 0's: 0 Z-trim(106.2): 193 B-trim: 78 in 1/50
Lambda= 0.104631
statistics sampled from 8615 (8857) to 8615 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.272), width: 16
Scan time: 3.730
The best scores are: opt bits E(32554)
CCDS10453.1 TBL3 gene_id:10607|Hs108|chr16 ( 808) 5416 830.7 0
CCDS898.1 WDR3 gene_id:10885|Hs108|chr1 ( 943) 363 68.0 8.5e-11
>>CCDS10453.1 TBL3 gene_id:10607|Hs108|chr16 (808 aa)
initn: 5416 init1: 5416 opt: 5416 Z-score: 4430.5 bits: 830.7 E(32554): 0
Smith-Waterman score: 5416; 99.8% identity (99.9% similar) in 808 aa overlap (1-808:1-808)
10 20 30 40 50 60
pF1KB3 MAETAAGVGRFKTNYAVERKIEPFYKGGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MAETAAGVGRFKTNYAVERKIEPFYKGGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LEQEDQEDITAFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LEQEDQEDITAFDLSPDNEVLVTASRALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 STLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 STLLATGGCDGAVRVWDIVRHYGTHHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVW
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 SLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SLQDRSCLAVLTAHYSAVTSLAFSADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 AAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGPGRELTHCTL
::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::
CCDS10 AAVLLPEEPVSQLGVKSPGLYFLTAGDQGTLRVWEAASGQCVYTQAQPPGPGQELTHCTL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 AHTAGVVLTATADHNLLLYEARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AHTAGVVLTATADHNLLLYEARSLRLQKQFAGYSEEVLDVRFLGPEDSHVVVASNSPCLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 VFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSVRIWRMNKAGQVMCVAQGSGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VFELQTSACQILHGHTDIVLALDVFRKGWLFASCAKDQSVRIWRMNKAGQVMCVAQGSGH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 THSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLPKNTAPDNGPILLQAQTTQRCHDK
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
CCDS10 THSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLSKNTAPDNGPILLQAQTTQRCHDK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVLATAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 DINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSPMDQVLATAS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 ADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ADGTIKLWALQDFSCLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLWTIKNNECVRT
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 LDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQELDNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LDAHEDKVWGLHCSRLDDHALTGASDSRVILWKDVTEAEQAEEQARQEEQVVRQQELDNL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 LHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLRFCVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLRRDQKEALLRFCVT
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 WNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQAAAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WNTNSRHCHEAQAVLGVLLRREAPEELLAYEGVRAALEALLPYTERHFQRLSRTLQAAAF
730 740 750 760 770 780
790 800
pF1KB3 LDFLWHNMKLPVPAAAPTPWETHKGALP
::::::::::::::::::::::::::::
CCDS10 LDFLWHNMKLPVPAAAPTPWETHKGALP
790 800
>>CCDS898.1 WDR3 gene_id:10885|Hs108|chr1 (943 aa)
initn: 558 init1: 327 opt: 363 Z-score: 307.3 bits: 68.0 E(32554): 8.5e-11
Smith-Waterman score: 448; 21.9% identity (52.3% similar) in 702 aa overlap (57-656:60-732)
30 40 50 60 70 80
pF1KB3 GGKAQLDQTGQHLFCVCGTRVNILEVASGAVLRSLEQEDQEDITAFDLSPDNEVLVTASR
.:..:.:: .: . :::. :... .
CCDS89 TLRGEKGRYVAVPACEHVFIWDLRKGEKILILQGLKQE----VTCLCPSPDGLHLAVGYE
30 40 50 60 70 80
90 100 110 120 130 140
pF1KB3 --ALLLAQWAWQEGSVTRLWKAIHTAPVATMAFDPTSTLLATGGCDGAVRVWDIVRHYGT
.. . . ::.:: : : ..:. .: . ::.:. : . :::.. . :
CCDS89 DGSIRIFSLLSGEGNVTF---NGHKAAITTLKYDQLGGRLASGSKDTDIIVWDVINESGL
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB3 HHFRGSPGVVHLVAFHPDPTRLLLFSSATDAAIRVWSLQDRSCLAVLTAHYSAVTSLAFS
....: .. . : . . :: .:. :. .. :.:. . :. ....: . : .:..
CCDS89 YRLKGHKDAITQALFLREKN--LLVTSGKDTMVKWWDLDTQHCFKTMVGHRTEVWGLVLL
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB3 ADGHTMLSSGRDKICIIWDLQSCQATRTVPVFESVEAAVLLPEEP-VSQLGVKSPGLYFL
.. . ..... :. .:: . .. .: :::: ... .:::.
CCDS89 SEEKRLITGASDSELRVWD---------IAYLQEIED----PEEPDPKKIKGSSPGIQDT
210 220 230 240
270 280 290 300 310 320
pF1KB3 TAGDQGTLRVWEAASGQCVYTQAQPP--GPGRE-LTHCTLAHTAGVVLTATADHNLLLYE
...:.... :: . . . ::. ... .. .:. .. .: : :.
CCDS89 LEAEDGAFETDEAPEDRILSCRKAGSIMREGRDRVVNLAVDKTGRILACHGTDSVLELFC
250 260 270 280 290 300
330 340
pF1KB3 ARSLR-LQKQF----------------AGYSEE---------------VLDVRFLGPEDS
: . .::.. : :. : ... . :
CCDS89 ILSKKEIQKKMDKKMKKARKKAKLHSSKGEEEDPEVNVEMSLQDEIQRVTNIKTSAKIKS
310 320 330 340 350 360
350 360 370 380
pF1KB3 HVVVASNSPCLK-VFELQTSACQI-------------------LHGHTDIVLALDVFRKG
.. : :: :: ::.. .. . :: . : .:. .
CCDS89 FDLIHSPHGELKAVFLLQNNLVELYSLNPSLPTPQPVRTSRITIGGHRSDVRTLSFSSDN
370 380 390 400 410 420
390 400 410
pF1KB3 WLFASCAKDQSVRIWRMN-----------------------------KAGQVMCVAQGSG
: : : :..:: . :.:... .::
CCDS89 IAVLSAAAD-SIKIWNRSTLQCIRTMTCEYALCSFFVPGDRQVVIGTKTGKLQLYDLASG
430 440 450 460 470 480
420 430 440 450 460 470
pF1KB3 --------HTHSVGTVCCSRLKESFLVTGSQDCTVKLWPLPKALLPKNTAPDNGPILLQA
: .. .. : ...: :::. : .::.: . :. ... .. . :.
CCDS89 NLLETIDAHDGALWSMSLSPDQRGF-VTGGADKSVKFWDF--ELVKDENSTQKRLSVKQT
490 500 510 520 530 540
480 490 500 510 520 530
pF1KB3 QTTQRCHDKDINSVAIAPNDKLLATGSQDRTAKLWALPQCQLLGVFSGHRRGLWCVQFSP
.: : :.:. :. .::.::::.. : :.:.. . ... . ::. . :...:
CCDS89 RTLQ--LDEDVLCVSYSPNQKLLAVSLLDCTVKIFYVDTLKFFLSLYGHKLPVICMDISH
550 560 570 580 590 600
540 550 560 570 580 590
pF1KB3 MDQVLATASADGTIKLWALQDFS-CLKTFEGHDASVLKVAFVSRGTQLLSSGSDGLVKLW
..::.::: ..:.:.: ::. : :.. .:: ::. . :: .. ....:.: .: :
CCDS89 DGALIATGSADRNVKIWGL-DFGDCHKSLFAHDDSVMYLQFVPKSHLFFTAGKDHKIKQW
610 620 630 640 650 660
600 610 620 630 640
pF1KB3 TIKNNECVRTLDAHEDKVWGLHCSRLDDHALTGASDSRVILWKD------VTEAEQAEEQ
. : ..::..:....: : : :...... :. . ::. . : .. :..
CCDS89 DADKFEHIQTLEGHHQEIWCLAVSPSGDYVVSSSHDKSLRLWERTREPLILEEEREMERE
670 680 690 700 710 720
650 660 670 680 690 700
pF1KB3 ARQEEQVVRQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATML
:. ::.:.....
CCDS89 AEYEESVAKEDQPAVPGETQGDSYFTGKKTIETVKAAERIMEAIELYREETAKMKEHKAI
730 740 750 760 770 780
808 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:07:58 2016 done: Thu Nov 3 14:07:59 2016
Total Scan time: 3.730 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]