FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3912, 153 aa
  1>>>pF1KB3912 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8348+/-0.000642; mu= 14.4385+/- 0.039
 mean_var=61.3337+/-12.291, 0's: 0 Z-trim(110.6): 20  B-trim: 0 in 0/52
 Lambda= 0.163766
 statistics sampled from 11683 (11699) to 11683 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.359), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS9091.1 IGF1 gene_id:3479|Hs108|chr12           ( 153) 1058 257.6 2.1e-69
CCDS44961.1 IGF1 gene_id:3479|Hs108|chr12          ( 158)  934 228.3 1.4e-60
CCDS44960.1 IGF1 gene_id:3479|Hs108|chr12          ( 137)  902 220.7 2.4e-58
CCDS7728.1 IGF2 gene_id:3481|Hs108|chr11           ( 180)  317 82.6 1.2e-16
CCDS44517.1 IGF2 gene_id:3481|Hs108|chr11          ( 236)  317 82.7 1.5e-16


>>CCDS9091.1 IGF1 gene_id:3479|Hs108|chr12                (153 aa)
 initn: 1058 init1: 1058 opt: 1058  Z-score: 1359.4  bits: 257.6 E(32554): 2.1e-69
Smith-Waterman score: 1058; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KB3 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 ALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARS
               70        80        90       100       110       120

              130       140       150   
pF1KB3 VRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM
       :::::::::::::::::::::::::::::::::
CCDS90 VRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM
              130       140       150   

>>CCDS44961.1 IGF1 gene_id:3479|Hs108|chr12               (158 aa)
 initn: 934 init1: 934 opt: 934  Z-score: 1200.9  bits: 228.3 E(32554): 1.4e-60
Smith-Waterman score: 934; 100.0% identity (100.0% similar) in 134 aa overlap (1-134:1-134)

               10        20        30        40        50        60
pF1KB3 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 ALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARS
               70        80        90       100       110       120

              130       140       150        
pF1KB3 VRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM     
       ::::::::::::::                        
CCDS44 VRAQRHTDMPKTQKYQPPSTNKNTKSQRRKGSTFEERK
              130       140       150        

>>CCDS44960.1 IGF1 gene_id:3479|Hs108|chr12               (137 aa)
 initn: 902 init1: 902 opt: 902  Z-score: 1160.9  bits: 220.7 E(32554): 2.4e-58
Smith-Waterman score: 902; 100.0% identity (100.0% similar) in 132 aa overlap (22-153:6-137)

               10        20        30        40        50        60
pF1KB3 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVD
                            :::::::::::::::::::::::::::::::::::::::
CCDS44                 MITPTVKMHTMSSSHLFYLALCLLTFTSSATAGPETLCGAELVD
                               10        20        30        40    

               70        80        90       100       110       120
pF1KB3 ALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKSARS
           50        60        70        80        90       100    

              130       140       150   
pF1KB3 VRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM
       :::::::::::::::::::::::::::::::::
CCDS44 VRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM
          110       120       130       

>>CCDS7728.1 IGF2 gene_id:3481|Hs108|chr11                (180 aa)
 initn: 319 init1: 168 opt: 317  Z-score: 412.3  bits: 82.6 E(32554): 1.2e-16
Smith-Waterman score: 317; 58.2% identity (74.5% similar) in 98 aa overlap (27-121:5-94)

               10        20        30        40          50        
pF1KB3 MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAG--P-ETLCGAE
                                 :..: :  :..  :.:.:   :.  : :::::.:
CCDS77                       MGIPMGKSMLVLLTF--LAFASCCIAAYRPSETLCGGE
                                     10          20        30      

        60        70        80        90       100       110       
pF1KB3 LVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLKPAKS
       :::.::::::::::::..:..    :::.   :::.:::::::::  :: :::   ::::
CCDS77 LVDTLQFVCGDRGFYFSRPASR--VSRRS--RGIVEECCFRSCDLALLETYCA--TPAKS
         40        50          60          70        80          90

       120       130       140       150                           
pF1KB3 ARSVRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM                        
        :.:                                                        
CCDS77 ERDVSTPPTVLPDNFPRYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKELEAFR
              100       110       120       130       140       150

>>CCDS44517.1 IGF2 gene_id:3481|Hs108|chr11               (236 aa)
 initn: 306 init1: 168 opt: 317  Z-score: 410.6  bits: 82.7 E(32554): 1.5e-16
Smith-Waterman score: 317; 58.2% identity (74.5% similar) in 98 aa overlap (27-121:61-150)

                   10        20        30        40          50    
pF1KB3     MGKISSLPTQLFKCCFCDFLKVKMHTMSSSHLFYLALCLLTFTSSATAG--P-ETL
                                     :..: :  :..  :.:.:   :.  : :::
CCDS44 IIQIFWVGRKGELLRRTPVSSAMQTPMGIPMGKSMLVLLTF--LAFASCCIAAYRPSETL
               40        50        60        70          80        

            60        70        80        90       100       110   
pF1KB3 CGAELVDALQFVCGDRGFYFNKPTGYGSSSRRAPQTGIVDECCFRSCDLRRLEMYCAPLK
       ::.::::.::::::::::::..:..    :::.   :::.:::::::::  :: :::   
CCDS44 CGGELVDTLQFVCGDRGFYFSRPASR--VSRRS--RGIVEECCFRSCDLALLETYCA--T
       90       100       110           120       130       140    

           120       130       140       150                       
pF1KB3 PAKSARSVRAQRHTDMPKTQKEVHLKNASRGSAGNKNYRM                    
       :::: :.:                                                    
CCDS44 PAKSERDVSTPPTVLPDNFPRYPVGKFFQYDTWKQSTQRLRRGLPALLRARRGHVLAKEL
            150       160       170       180       190       200  




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:10:09 2016 done: Thu Nov  3 14:10:09 2016
 Total Scan time:  1.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]