FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3929, 258 aa
  1>>>pF1KB3929 258 - 258 aa - 258 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6498+/-0.000322; mu= 9.5401+/- 0.020
 mean_var=106.2460+/-20.742, 0's: 0 Z-trim(118.7): 22  B-trim: 82 in 1/54
 Lambda= 0.124428
 statistics sampled from 31912 (31934) to 31912 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.374), width:  16
 Scan time:  6.460

The best scores are:                                      opt bits E(85289)
NP_004773 (OMIM: 604202,609528) synaptosomal-assoc ( 258) 1684 312.2 5.8e-85
XP_006720788 (OMIM: 602534) PREDICTED: synaptosoma ( 222)  169 40.2  0.0038
XP_016878181 (OMIM: 602534) PREDICTED: synaptosoma ( 224)  166 39.7  0.0055


>>NP_004773 (OMIM: 604202,609528) synaptosomal-associate  (258 aa)
 initn: 1684 init1: 1684 opt: 1684  Z-score: 1646.3  bits: 312.2 E(85289): 5.8e-85
Smith-Waterman score: 1684; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB3 MSAYPKSYNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRAEATAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSAYPKSYNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRAEATAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 NYFKSKPVETPPEQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NYFKSKPVETPPEQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTK
              190       200       210       220       230       240

              250        
pF1KB3 VDKLDVNIKSTERKVRQL
       ::::::::::::::::::
NP_004 VDKLDVNIKSTERKVRQL
              250        

>>XP_006720788 (OMIM: 602534) PREDICTED: synaptosomal-as  (222 aa)
 initn: 114 init1:  96 opt: 169  Z-score: 177.5  bits: 40.2 E(85289): 0.0038
Smith-Waterman score: 169; 24.5% identity (53.4% similar) in 204 aa overlap (47-242:7-203)

         20        30        40        50            60        70  
pF1KB3 DEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRA----EATAASTSRSLALMYESEK
                                     .:. .::    . .  :: : :.:  ::. 
XP_006                         MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQD
                                       10        20        30      

             80        90       100       110       120       130  
pF1KB3 VGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLVNYFKSKPVETPP
       .:. .   : .:.  :.: :. .:....:.. ..: .. ...  :  :      : .   
XP_006 AGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTELNKCCGLCVC-----PCNRFS
         40        50        60        70        80             90 

            140       150       160       170       180            
pF1KB3 EQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGAGSAMSTDA----
       . .    .. .:   :. .. :   .    . :      .  ::  :  .  .: :    
XP_006 DVGCFYETRTKNF--ESGKAYKTTWGDGGENSPCNVVSKQPGPVTNGQLQQPTTGAASGG
             100         110       120       130       140         

      190       200       210       220       230       240        
pF1KB3 YPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNI
       : :     : ..... :: ...  :: :::.::.. .::. :.  . :.: :.:      
XP_006 YIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDKADTNRDRI
     150       160       170       180       190       200         

      250           
pF1KB3 KSTERKVRQL   
                    
XP_006 DIANARAKKLIDS
     210       220  

>>XP_016878181 (OMIM: 602534) PREDICTED: synaptosomal-as  (224 aa)
 initn: 101 init1: 101 opt: 166  Z-score: 174.5  bits: 39.7 E(85289): 0.0055
Smith-Waterman score: 166; 24.6% identity (53.2% similar) in 203 aa overlap (47-241:7-202)

         20        30        40        50            60        70  
pF1KB3 DEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRA----EATAASTSRSLALMYESEK
                                     .:. .::    . .  :: : :.:  ::. 
XP_016                         MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQD
                                       10        20        30      

             80        90       100       110       120       130  
pF1KB3 VGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLVNYFKSKPVETPP
       .:. .   : .:.  :.: :. .:....:.. ..: .. ...  :  :      : .   
XP_016 AGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTELNKCCGLCVC-----PCNRFS
         40        50        60        70        80             90 

            140       150       160       170       180            
pF1KB3 EQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGAGSAMSTDA----
       . .    .. .:   :. .. :   .    . :      .  ::  :  .  .: :    
XP_016 DVGCFYETRTKNF--ESGKAYKTTWGDGGENSPCNVVSKQPGPVTNGQLQQPTTGAASGG
             100         110       120       130       140         

      190       200       210       220       230       240        
pF1KB3 YPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTKVDKLDVNI
       : :     : ..... :: ...  :: :::.::.. .::. :.  . :.: ::       
XP_016 YIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQNPQIKRITDKVKAFYCHK
     150       160       170       180       190       200         

      250             
pF1KB3 KSTERKVRQL     
                      
XP_016 KMRHPVQCFSNRHLC
     210       220    




258 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:35:12 2016 done: Fri Nov  4 23:35:13 2016
 Total Scan time:  6.460 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]