Result of FASTA (ccds) for
pF1KB3940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3940, 171 aa
1>>>pF1KB3940 171 - 171 aa - 171 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1185+/-0.000742; mu= 13.2933+/- 0.045
mean_var=55.8118+/-11.153, 0's: 0 Z-trim(107.6): 13 B-trim: 109 in 1/49
Lambda= 0.171677
statistics sampled from 9688 (9696) to 9688 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.698), E-opt: 0.2 (0.298), width: 16
Scan time: 1.930
The best scores are: opt bits E(32554)
CCDS9043.1 BTG1 gene_id:694|Hs108|chr12 ( 171) 1139 289.7 5.9e-79
CCDS1437.1 BTG2 gene_id:7832|Hs108|chr1 ( 158) 620 161.2 2.7e-40
CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17 ( 345) 363 97.6 7.8e-21
CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22 ( 344) 360 96.9 1.3e-20
CCDS13569.1 BTG3 gene_id:10950|Hs108|chr21 ( 252) 301 82.2 2.5e-16
CCDS46636.1 BTG3 gene_id:10950|Hs108|chr21 ( 296) 291 79.8 1.6e-15
CCDS8346.1 BTG4 gene_id:54766|Hs108|chr11 ( 223) 269 74.3 5.4e-14
>>CCDS9043.1 BTG1 gene_id:694|Hs108|chr12 (171 aa)
initn: 1139 init1: 1139 opt: 1139 Z-score: 1531.0 bits: 289.7 E(32554): 5.9e-79
Smith-Waterman score: 1139; 100.0% identity (100.0% similar) in 171 aa overlap (1-171:1-171)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
130 140 150 160 170
>>CCDS1437.1 BTG2 gene_id:7832|Hs108|chr1 (158 aa)
initn: 693 init1: 611 opt: 620 Z-score: 836.9 bits: 161.2 E(32554): 2.7e-40
Smith-Waterman score: 686; 63.4% identity (86.0% similar) in 164 aa overlap (7-170:5-157)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
... :. ::::::.:.:..:::.: .::..:..:: .::: :.:::::::::::
CCDS14 MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEK
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
: ::::::::::::::::.:...:..::::. .: .::::::::::::::::::::::::
CCDS14 PSKGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGS
60 70 80 90 100 110
130 140 150 160 170
pF1KB3 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
:::::: .: ..: . ..::...::::.:::::: .:.::
CCDS14 ICVLYEEAPLAASC----------GLLTCKNQVLLGRSSPSKNY-VMAVSS
120 130 140 150
>>CCDS11576.1 TOB1 gene_id:10140|Hs108|chr17 (345 aa)
initn: 365 init1: 338 opt: 363 Z-score: 487.5 bits: 97.6 E(32554): 7.8e-21
Smith-Waterman score: 363; 46.4% identity (81.2% similar) in 112 aa overlap (14-125:4-113)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
:: .:..:: ..: .: .:... :.. :..:: ..:. ::.:::
CCDS11 MQLEIQVALNFIISYLYNK--LPRRRVNIFGEELERLLKKKYEGHWYPEK
10 20 30 40
70 80 90 100 110 120
pF1KB3 PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
: ::::.:::.:..:.::.: ::... ::. ... ::..:..:.::.::::.::: :
CCDS11 PYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGP
50 60 70 80 90 100
130 140 150 160 170
pF1KB3 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
. :::
CCDS11 VKVLYVDDNNENGCELDKEIKNSFNPEAQVFMPISDPASSVSSSPSPPFGHSAAVSPTFM
110 120 130 140 150 160
>>CCDS14015.1 TOB2 gene_id:10766|Hs108|chr22 (344 aa)
initn: 361 init1: 334 opt: 360 Z-score: 483.5 bits: 96.9 E(32554): 1.3e-20
Smith-Waterman score: 360; 43.2% identity (76.3% similar) in 118 aa overlap (14-131:4-119)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
:: .:..:: ..: .: .:. . :.. :..:: ..:. ::.:::
CCDS14 MQLEIKVALNFIISYLYNK--LPRRRADLFGEELERLLKKKYEGHWYPEK
10 20 30 40
70 80 90 100 110 120
pF1KB3 PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
: ::::.::..:.. .::.. ::.: ::. ... .: ::..:.::.::::.::: :.
CCDS14 PLKGSGFRCVHIGEMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGA
50 60 70 80 90 100
130 140 150 160 170
pF1KB3 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
. ::: . :
CCDS14 VKVLYLDDSEGCGAPELDKEIKSSFNPDAQVFVPIGSQDSSLSNSPSPSFGQSPSPTFIP
110 120 130 140 150 160
>>CCDS13569.1 BTG3 gene_id:10950|Hs108|chr21 (252 aa)
initn: 247 init1: 247 opt: 301 Z-score: 406.7 bits: 82.2 E(32554): 2.5e-16
Smith-Waterman score: 301; 40.5% identity (72.4% similar) in 116 aa overlap (11-124:1-114)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
: .::::.: :.....: . ... .. :...: .: :.::.::.:::
CCDS13 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEK
10 20 30 40 50
70 80 90 100 110
pF1KB3 PCKGSGYRCIRIN--HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGED
: ::..:::::.: ...:: . .: . . ..: ::.:::::::: :: : ::
CCDS13 PSKGQAYRCIRVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCRYGEK
60 70 80 90 100
120 130 140 150 160 170
pF1KB3 GSICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
.. ..
CCDS13 NNAFIVASFENKDENKDEISRKVTRALDKVTSDYHSGSSSSDEETSKEMEVKPSSVTAAA
110 120 130 140 150 160
>>CCDS46636.1 BTG3 gene_id:10950|Hs108|chr21 (296 aa)
initn: 236 init1: 236 opt: 291 Z-score: 392.2 bits: 79.8 E(32554): 1.6e-15
Smith-Waterman score: 291; 42.6% identity (72.2% similar) in 115 aa overlap (11-122:1-111)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
: .::::.: :.....: . ... .. :...: .: :.::.::.:::
CCDS46 MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEK
10 20 30 40 50
70 80 90 100 110
pF1KB3 PCKGSGYRCIRIN--HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGED
: ::..:::::.: ...:: . .: . . ..: ::.:::::::: :: : .:
CCDS46 PSKGQAYRCIRVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCR--RD
60 70 80 90 100
120 130 140 150 160 170
pF1KB3 G-SICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
: : :
CCDS46 GVSPCWPDCSQTPDLVIRPPWPPKALDYRREPLRPASSFLIMYGEKNNAFIVASFENKDE
110 120 130 140 150 160
>>CCDS8346.1 BTG4 gene_id:54766|Hs108|chr11 (223 aa)
initn: 228 init1: 207 opt: 269 Z-score: 364.7 bits: 74.3 E(32554): 5.4e-14
Smith-Waterman score: 269; 37.6% identity (73.4% similar) in 109 aa overlap (11-117:1-107)
10 20 30 40 50 60
pF1KB3 MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
: :::..: :...... . :..:.. :...:. .: : :. :: .
CCDS83 MRDEIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMTILFETYRSHWHSDC
10 20 30 40 50
70 80 90 100 110
pF1KB3 PCKGSGYRCIRINHKM--DPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGED
: ::...::::::... ::.. .: . ... ..: ::.:.:.::::.:: : ::
CCDS83 PSKGQAFRCIRINNNQNKDPILERACVESNVDFSHL--GLPKEMTIWVDPFEVCCRYGEK
60 70 80 90 100
120 130 140 150 160 170
pF1KB3 GSICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
CCDS83 NHPFTVASFKGRWEEWELYQQISYAVSRASSDVSSGTSCDEESCSKEPRVIPKVSNPKSI
110 120 130 140 150 160
171 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:27:46 2016 done: Sat Nov 5 05:27:46 2016
Total Scan time: 1.930 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]