Result of FASTA (ccds) for
pF1KB3988
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3988, 173 aa
1>>>pF1KB3988 173 - 173 aa - 173 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4494+/-0.000732; mu= 11.1163+/- 0.043
mean_var=67.4025+/-13.734, 0's: 0 Z-trim(108.5): 94 B-trim: 69 in 1/48
Lambda= 0.156220
statistics sampled from 10163 (10280) to 10163 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.316), width: 16
Scan time: 1.860
The best scores are: opt bits E(32554)
CCDS4965.1 PTP4A1 gene_id:7803|Hs108|chr6 ( 173) 1181 274.7 2e-74
CCDS348.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 167) 1044 243.8 3.8e-65
CCDS6383.1 PTP4A3 gene_id:11156|Hs108|chr8 ( 173) 962 225.3 1.4e-59
CCDS53292.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 136) 683 162.4 9.8e-41
CCDS59193.1 PTP4A2 gene_id:8073|Hs108|chr1 ( 142) 674 160.4 4.2e-40
CCDS6382.1 PTP4A3 gene_id:11156|Hs108|chr8 ( 148) 616 147.3 3.7e-36
>>CCDS4965.1 PTP4A1 gene_id:7803|Hs108|chr6 (173 aa)
initn: 1181 init1: 1181 opt: 1181 Z-score: 1449.7 bits: 274.7 E(32554): 2e-74
Smith-Waterman score: 1181; 100.0% identity (100.0% similar) in 173 aa overlap (1-173:1-173)
10 20 30 40 50 60
pF1KB3 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS49 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
130 140 150 160 170
>>CCDS348.1 PTP4A2 gene_id:8073|Hs108|chr1 (167 aa)
initn: 1046 init1: 1023 opt: 1044 Z-score: 1283.1 bits: 243.8 E(32554): 3.8e-65
Smith-Waterman score: 1044; 87.6% identity (94.7% similar) in 170 aa overlap (4-173:1-167)
10 20 30 40 50 60
pF1KB3 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
::::::::..:.:::::::::::::::::: ::::::::::.::::.:::: . :::
CCDS34 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
:::::::::::::::: ::::::::.:.: :::::::::.::::::::::::::::::::
CCDS34 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
60 70 80 90 100 110
130 140 150 160 170
pF1KB3 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
: ::::::::::::::::::::::::::::::::::::::.:.::: ::.:
CCDS34 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
120 130 140 150 160
>>CCDS6383.1 PTP4A3 gene_id:11156|Hs108|chr8 (173 aa)
initn: 962 init1: 962 opt: 962 Z-score: 1183.0 bits: 225.3 E(32554): 1.4e-59
Smith-Waterman score: 962; 79.1% identity (92.4% similar) in 172 aa overlap (1-172:1-172)
10 20 30 40 50 60
pF1KB3 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
::::::::::::.::.::::::::::::::. :::.:::::.::.:::::.::: : .::
CCDS63 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
.:: :.:::::::::: ...:.::::::: :: : :: :.::::::::::::::::::::
CCDS63 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGRAPVLVALALI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
:.:::::::.::::::::::.::::: ::::::::.:::::: . :.. ::.
CCDS63 ESGMKYEDAIQFIRQKRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
130 140 150 160 170
>>CCDS53292.1 PTP4A2 gene_id:8073|Hs108|chr1 (136 aa)
initn: 869 init1: 662 opt: 683 Z-score: 844.8 bits: 162.4 E(32554): 9.8e-41
Smith-Waterman score: 807; 72.4% identity (77.6% similar) in 170 aa overlap (4-173:1-136)
10 20 30 40 50 60
pF1KB3 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
::::::::..:.:::::::::::::::::: :
CCDS53 MNRPAPVEISYENMRFLITHNPTNATLNKFTE-------------------------
10 20 30
70 80 90 100 110 120
pF1KB3 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
:::::::::: ::::::::.:.: :::::::::.::::::::::::::::::::
CCDS53 ------DWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGRAPVLVALALI
40 50 60 70 80
130 140 150 160 170
pF1KB3 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
: ::::::::::::::::::::::::::::::::::::::.:.::: ::.:
CCDS53 ECGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
90 100 110 120 130
>>CCDS59193.1 PTP4A2 gene_id:8073|Hs108|chr1 (142 aa)
initn: 697 init1: 674 opt: 674 Z-score: 833.5 bits: 160.4 E(32554): 4.2e-40
Smith-Waterman score: 839; 73.5% identity (80.6% similar) in 170 aa overlap (4-173:1-142)
10 20 30 40 50 60
pF1KB3 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
::::::::..:.:::::::::::::::::: ::::::::::.::::.:::: . :::
CCDS59 MNRPAPVEISYENMRFLITHNPTNATLNKFTEELKKYGVTTLVRVCDATYDKAPVEK
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
:::::::::::::::: ::::::::.:.: :::::::::.::::::::::
CCDS59 EGIHVLDWPFDDGAPPPNQIVDDWLNLLKTKFREEPGCCVAVHCVAGLGR----------
60 70 80 90 100
130 140 150 160 170
pF1KB3 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
:::::::::::::::::::::::::.:.::: ::.:
CCDS59 ---------------KRRGAFNSKQLLYLEKYRPKMRLRFRDTNGH---CCVQ
110 120 130 140
>>CCDS6382.1 PTP4A3 gene_id:11156|Hs108|chr8 (148 aa)
initn: 801 init1: 616 opt: 616 Z-score: 762.6 bits: 147.3 E(32554): 3.7e-36
Smith-Waterman score: 755; 65.7% identity (77.9% similar) in 172 aa overlap (1-172:1-147)
10 20 30 40 50 60
pF1KB3 MARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEK
::::::::::::.::.::::::::::::::. :::.:::::.::.:::::.::: : .::
CCDS63 MARMNRPAPVEVSYKHMRFLITHNPTNATLSTFIEDLKKYGATTVVRVCEVTYDKTPLEK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 EGIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALI
.:: :.:::::::::: ...:.::::::: :: : :: :.::::::::::
CCDS63 DGITVVDWPFDDGAPPPGKVVEDWLSLVKAKFCEAPGSCVAVHCVAGLGR----------
70 80 90 100 110
130 140 150 160 170
pF1KB3 EGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDSNGHRNNCCIQ
:::::.::::: ::::::::.:::::: . :.. ::.
CCDS63 ---------------KRRGAINSKQLTYLEKYRPKQRLRFKDPHTHKTRCCVM
120 130 140
173 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:20:14 2016 done: Thu Nov 3 21:20:15 2016
Total Scan time: 1.860 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]