Result of FASTA (ccds) for
pF1KB3998
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3998, 191 aa
1>>>pF1KB3998 191 - 191 aa - 191 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0346+/-0.000722; mu= 14.8000+/- 0.044
mean_var=69.9309+/-13.973, 0's: 0 Z-trim(110.1): 171 B-trim: 358 in 1/49
Lambda= 0.153370
statistics sampled from 11205 (11388) to 11205 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.35), width: 16
Scan time: 1.620
The best scores are: opt bits E(32554)
CCDS222.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 1283 292.3 1.2e-79
CCDS221.1 CDC42 gene_id:998|Hs108|chr1 ( 191) 1224 279.2 1.1e-75
CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 ( 192) 946 217.7 3.5e-57
CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 ( 192) 941 216.6 7.5e-57
CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 ( 192) 925 213.0 8.8e-56
CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 ( 205) 880 203.1 9.2e-53
CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 ( 214) 821 190.1 8.1e-49
CCDS7748.1 RHOG gene_id:391|Hs108|chr11 ( 191) 814 188.5 2.2e-48
CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 ( 258) 769 178.6 2.7e-45
CCDS2795.1 RHOA gene_id:387|Hs108|chr3 ( 193) 696 162.4 1.6e-40
CCDS10068.1 RHOV gene_id:171177|Hs108|chr15 ( 236) 695 162.2 2.1e-40
CCDS854.1 RHOC gene_id:389|Hs108|chr1 ( 193) 684 159.7 9.9e-40
CCDS1699.1 RHOB gene_id:388|Hs108|chr2 ( 196) 660 154.4 4e-38
CCDS8155.1 RHOD gene_id:29984|Hs108|chr11 ( 210) 595 140.1 9e-34
CCDS9222.1 RHOF gene_id:54509|Hs108|chr12 ( 211) 584 137.6 4.9e-33
CCDS82775.1 RHOA gene_id:387|Hs108|chr3 ( 187) 575 135.6 1.8e-32
CCDS3458.1 RHOH gene_id:399|Hs108|chr4 ( 191) 524 124.3 4.5e-29
CCDS5349.1 RAC1 gene_id:5879|Hs108|chr7 ( 211) 523 124.1 5.6e-29
CCDS2190.1 RND3 gene_id:390|Hs108|chr2 ( 244) 513 122.0 2.9e-28
CCDS11452.1 RND2 gene_id:8153|Hs108|chr17 ( 227) 483 115.3 2.7e-26
CCDS8771.1 RND1 gene_id:27289|Hs108|chr12 ( 232) 435 104.7 4.4e-23
CCDS6034.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 727) 327 81.2 1.7e-15
CCDS55211.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 734) 327 81.2 1.7e-15
CCDS55210.1 RHOBTB2 gene_id:23221|Hs108|chr8 ( 749) 327 81.2 1.7e-15
CCDS7261.1 RHOBTB1 gene_id:9886|Hs108|chr10 ( 696) 326 80.9 1.9e-15
CCDS8703.1 KRAS gene_id:3845|Hs108|chr12 ( 189) 273 68.8 2.3e-12
CCDS7698.1 HRAS gene_id:3265|Hs108|chr11 ( 189) 262 66.3 1.3e-11
CCDS1123.1 RIT1 gene_id:6016|Hs108|chr1 ( 219) 261 66.2 1.6e-11
CCDS58037.1 RIT1 gene_id:6016|Hs108|chr1 ( 236) 261 66.2 1.7e-11
CCDS877.1 NRAS gene_id:4893|Hs108|chr1 ( 189) 259 65.7 2e-11
CCDS5460.1 RALA gene_id:5898|Hs108|chr7 ( 206) 259 65.7 2.1e-11
CCDS62431.1 RIT2 gene_id:6014|Hs108|chr18 ( 153) 256 64.9 2.7e-11
CCDS8702.1 KRAS gene_id:3845|Hs108|chr12 ( 188) 256 65.0 3.1e-11
CCDS11921.1 RIT2 gene_id:6014|Hs108|chr18 ( 217) 256 65.1 3.5e-11
CCDS41846.1 RAB35 gene_id:11021|Hs108|chr12 ( 201) 250 63.7 8.3e-11
CCDS2131.1 RALB gene_id:5899|Hs108|chr2 ( 206) 250 63.7 8.4e-11
CCDS7699.1 HRAS gene_id:3265|Hs108|chr11 ( 170) 249 63.4 8.5e-11
>>CCDS222.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 1283 init1: 1283 opt: 1283 Z-score: 1543.1 bits: 292.3 E(32554): 1.2e-79
Smith-Waterman score: 1283; 100.0% identity (100.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB3 ETQPKRKCCIF
:::::::::::
CCDS22 ETQPKRKCCIF
190
>>CCDS221.1 CDC42 gene_id:998|Hs108|chr1 (191 aa)
initn: 1271 init1: 1224 opt: 1224 Z-score: 1472.6 bits: 279.2 E(32554): 1.1e-75
Smith-Waterman score: 1224; 95.3% identity (98.4% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::
CCDS22 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP
130 140 150 160 170 180
190
pF1KB3 ETQPKRKCCIF
: . .:.: ..
CCDS22 EPKKSRRCVLL
190
>>CCDS11798.1 RAC3 gene_id:5881|Hs108|chr17 (192 aa)
initn: 994 init1: 917 opt: 946 Z-score: 1140.1 bits: 217.7 E(32554): 3.5e-57
Smith-Waterman score: 946; 70.3% identity (88.0% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. :.: .:::.::::
CCDS11 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
:::::::::::::::::::.:::.:::.:::::. :: ::. ::::.::.:::::..:::
CCDS11 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
:: .:::.: .: ::: . .::.. .:::.:::::::::::.:::::: :.: ::
CCDS11 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB3 ETQ-PKRKCCIF
.. : .:: .:
CCDS11 PVKKPGKKCTVF
190
>>CCDS5348.1 RAC1 gene_id:5879|Hs108|chr7 (192 aa)
initn: 1011 init1: 941 opt: 941 Z-score: 1134.1 bits: 216.6 E(32554): 7.5e-57
Smith-Waterman score: 941; 69.1% identity (89.0% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. :.: .:::.::::
CCDS53 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
:::::::::::::::::::.:::.:::.:::::. :: ::. ::::.::..::::..:::
CCDS53 QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
:: .::::: ..: ::: . .:... ::::.:::::::::::.:::::: :.: ::
CCDS53 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP
130 140 150 160 170 180
190
pF1KB3 ETQPKRKCCIF
.. ... :..
CCDS53 PVKKRKRKCLLL
190
>>CCDS13945.1 RAC2 gene_id:5880|Hs108|chr22 (192 aa)
initn: 954 init1: 919 opt: 925 Z-score: 1115.0 bits: 213.0 E(32554): 8.8e-56
Smith-Waterman score: 925; 69.3% identity (87.5% similar) in 192 aa overlap (1-191:1-192)
10 20 30 40 50 60
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
::.::::::::::::::::::::::: ::.::.:::::::...::. ..: .:::.::::
CCDS13 MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
:::::::::::::::::::.:::.:::.:.:::. :: ::. ::::.::..::::..:::
CCDS13 QEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLR
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEP-
:: .::::: ..: ::: . ::... .:::.:::::::::::.:::::: :.: :
CCDS13 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ
130 140 150 160 170 180
180 190
pF1KB3 PETQPKRKCCIF
: : :: : ..
CCDS13 PTRQQKRACSLL
190
>>CCDS33191.1 RHOQ gene_id:23433|Hs108|chr2 (205 aa)
initn: 888 init1: 868 opt: 880 Z-score: 1060.8 bits: 203.1 E(32554): 9.2e-53
Smith-Waterman score: 880; 64.9% identity (84.5% similar) in 194 aa overlap (4-190:10-203)
10 20 30 40 50
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG
.::::::::::::::::.::... :: ::::::::.:::.: .::. : ::
CCDS33 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVG
:.:::::::::::::::::.:::::.:::::.:.::.::::.::::. .. :..::::.:
CCDS33 LYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 TQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAIL
:::::::::.:. .: :.::: : ..:::... : :::::::::.:::.::::::.
CCDS33 TQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAII
130 140 150 160 170 180
180 190
pF1KB3 AALEPPETQPKRK-------CCIF
: : : . :.. ::.
CCDS33 AILTPKKHTVKKRIGSRCINCCLIT
190 200
>>CCDS9757.1 RHOJ gene_id:57381|Hs108|chr14 (214 aa)
initn: 843 init1: 810 opt: 821 Z-score: 990.0 bits: 190.1 E(32554): 8.1e-49
Smith-Waterman score: 821; 62.6% identity (85.6% similar) in 187 aa overlap (2-188:20-204)
10 20 30 40
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV
. .::::::::::::::::.::... :: ::::::::.:::
CCDS97 MNCKEGTDSSCGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEIT
:: .::. . :::.::::::::..:::::::.:::::.:::::.:.:..::.:.::::.
CCDS97 TVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELK
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 HHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQ
:..:..:.::::::::::.:. .: :.::.: : . :::. . : :.:::::::
CCDS97 DCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQ
130 140 150 160 170 180
170 180 190
pF1KB3 RGLKNVFDEAILAALEPPETQPKRKCCIF
.::: :::::::. ..: . :..:
CCDS97 KGLKAVFDEAILTIFHPK--KKKKRCSEGHSCCSII
190 200 210
>>CCDS7748.1 RHOG gene_id:391|Hs108|chr11 (191 aa)
initn: 814 init1: 799 opt: 814 Z-score: 982.3 bits: 188.5 E(32554): 2.2e-48
Smith-Waterman score: 814; 59.2% identity (84.3% similar) in 191 aa overlap (1-191:1-191)
10 20 30 40 50 60
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAG
::.:::::::::::::::::: :::: ::.::.:::::::.. . :. .:.:.::::
CCDS77 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQSAVDGRTVNLNLWDTAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLR
::.::::: ::::::.::..:::..:: :.:::..:: ::. :::: .:.:::::. :::
CCDS77 QEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALEPP
.:.:...: .. : ::::. .. ::....::.:.::::: : :.:.:: ::. :.:.:
CCDS77 AQPDTLRRLKEQGQAPITPQQGQALAKQIHAVRYLECSALQQDGVKEVFAEAVRAVLNPT
130 140 150 160 170 180
190
pF1KB3 ETQPKRKCCIF
. :.: ..
CCDS77 PIKRGRSCILL
190
>>CCDS1575.1 RHOU gene_id:58480|Hs108|chr1 (258 aa)
initn: 805 init1: 763 opt: 769 Z-score: 926.6 bits: 178.6 E(32554): 2.7e-45
Smith-Waterman score: 769; 60.2% identity (86.0% similar) in 186 aa overlap (4-186:50-234)
10 20 30
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYV
.:::.::::::::: :..::::: .:.::.
CCDS15 PPRRERGGRGGRGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYI
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB3 PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENV
::.:::....: . :.: : : :::::...:.:::: : .::.::.::::::::::.::
CCDS15 PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNV
80 90 100 110 120 130
100 110 120 130 140 150
pF1KB3 KEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKL-ARDLKAV
.::::::: ::::.:..::::: :::.: ... .: : :.::. :: : :: :...::.
CCDS15 SEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPV-PEEAAKLCAEEIKAA
140 150 160 170 180 190
160 170 180 190
pF1KB3 KYVECSALTQRGLKNVFDEAILAALEPPETQ--PKRKCCIF
.:.:::::::..::.::: ::.:... .:: ::.
CCDS15 SYIECSALTQKNLKEVFDAAIVAGIQYSDTQQQPKKSKSRTPDKMKNLSKSWWKKYCCFV
200 210 220 230 240 250
>>CCDS2795.1 RHOA gene_id:387|Hs108|chr3 (193 aa)
initn: 688 init1: 669 opt: 696 Z-score: 841.1 bits: 162.4 E(32554): 1.6e-40
Smith-Waterman score: 696; 52.4% identity (78.1% similar) in 187 aa overlap (5-191:7-193)
10 20 30 40 50
pF1KB3 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDT
: :.::::: ::::::: .. ..:: ::::::.::.. . . :. :.:.::
CCDS27 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 AGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQID
:::::::::::::::.:::.:.:::. ::.:.::. :::.::. : ::..:..:::.. :
CCDS27 AGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKD
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 LRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAILAALE
::.: : ..::: ::.:. :: .. .: . : :.:::: :. :...::. : :::.
CCDS27 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ
130 140 150 160 170 180
180 190
pF1KB3 PPETQPKRKCCIF
. . : : ..
CCDS27 ARRGKKKSGCLVL
190
191 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:31:20 2016 done: Sat Nov 5 05:31:21 2016
Total Scan time: 1.620 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]