Result of FASTA (ccds) for
pF1KB4017
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4017, 464 aa
1>>>pF1KB4017 464 - 464 aa - 464 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5887+/-0.000871; mu= 16.8260+/- 0.052
mean_var=80.2896+/-15.401, 0's: 0 Z-trim(108.1): 23 B-trim: 114 in 1/49
Lambda= 0.143135
statistics sampled from 9953 (9966) to 9953 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.306), width: 16
Scan time: 3.040
The best scores are: opt bits E(32554)
CCDS47816.1 GFRA2 gene_id:2675|Hs108|chr8 ( 464) 3198 670.1 1.4e-192
CCDS55208.1 GFRA2 gene_id:2675|Hs108|chr8 ( 359) 2372 499.4 2.4e-141
CCDS55207.1 GFRA2 gene_id:2675|Hs108|chr8 ( 331) 2204 464.7 6.4e-131
CCDS44481.1 GFRA1 gene_id:2674|Hs108|chr10 ( 465) 1443 307.7 1.7e-83
CCDS7593.1 GFRA1 gene_id:2674|Hs108|chr10 ( 460) 1436 306.2 4.6e-83
CCDS13055.1 GFRA4 gene_id:64096|Hs108|chr20 ( 269) 617 136.9 2.4e-32
CCDS4201.1 GFRA3 gene_id:2676|Hs108|chr5 ( 400) 574 128.2 1.6e-29
CCDS13056.1 GFRA4 gene_id:64096|Hs108|chr20 ( 299) 343 80.4 2.8e-15
CCDS4957.1 GFRAL gene_id:389400|Hs108|chr6 ( 394) 283 68.1 1.9e-11
>>CCDS47816.1 GFRA2 gene_id:2675|Hs108|chr8 (464 aa)
initn: 3198 init1: 3198 opt: 3198 Z-score: 3571.2 bits: 670.1 E(32554): 1.4e-192
Smith-Waterman score: 3198; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)
10 20 30 40 50 60
pF1KB4 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MILANVFCLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RQCLAGRDRNTMLANKECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 EFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 YISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 CSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 IGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 IGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTD
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 VNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSM
370 380 390 400 410 420
430 440 450 460
pF1KB4 CFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
430 440 450 460
>>CCDS55208.1 GFRA2 gene_id:2675|Hs108|chr8 (359 aa)
initn: 2372 init1: 2372 opt: 2372 Z-score: 2650.9 bits: 499.4 E(32554): 2.4e-141
Smith-Waterman score: 2372; 100.0% identity (100.0% similar) in 346 aa overlap (119-464:14-359)
90 100 110 120 130 140
pF1KB4 PLYDCRCKRGMKKELQCLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFRLASIFSGT
::::::::::::::::::::::::::::::
CCDS55 MILANVFCLFFFLGEEFYEASPYEPVTSRLSDIFRLASIFSGT
10 20 30 40
150 160 170 180 190 200
pF1KB4 GADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFF
50 60 70 80 90 100
210 220 230 240 250 260
pF1KB4 DRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRL
110 120 130 140 150 160
270 280 290 300 310 320
pF1KB4 ADFHANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ADFHANCRASYQTVTSCPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGS
170 180 190 200 210 220
330 340 350 360 370 380
pF1KB4 GNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 GNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDL
230 240 250 260 270 280
390 400 410 420 430 440
pF1KB4 SDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFTELTTNIIPGSNKVIKPNSGPSRARP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SDSTSLGTSVITTCTSVQEQGLKANNSKELSMCFTELTTNIIPGSNKVIKPNSGPSRARP
290 300 310 320 330 340
450 460
pF1KB4 SAALTVLSVLMLKLAL
::::::::::::::::
CCDS55 SAALTVLSVLMLKLAL
350
>>CCDS55207.1 GFRA2 gene_id:2675|Hs108|chr8 (331 aa)
initn: 2198 init1: 2198 opt: 2204 Z-score: 2464.0 bits: 464.7 E(32554): 6.4e-131
Smith-Waterman score: 2204; 97.6% identity (98.8% similar) in 330 aa overlap (135-464:3-331)
110 120 130 140 150 160
pF1KB4 CLQIYWSIHLGLTEGEEFYEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDA
:...: : .: ::::::::::::::::::
CCDS55 MILANVFCLF-FFLGTGADPVVSAKSNHCLDA
10 20 30
170 180 190 200 210 220
pF1KB4 AKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AKACNLNDNCKKLRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSC
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB4 QDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QDQACAERRRQTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTS
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB4 CPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 CPADNYQACLGSYAGMIGFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTE
160 170 180 190 200 210
350 360 370 380 390 400
pF1KB4 NPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 NPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTS
220 230 240 250 260 270
410 420 430 440 450 460
pF1KB4 VQEQGLKANNSKELSMCFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VQEQGLKANNSKELSMCFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
280 290 300 310 320 330
>>CCDS44481.1 GFRA1 gene_id:2674|Hs108|chr10 (465 aa)
initn: 1379 init1: 612 opt: 1443 Z-score: 1612.6 bits: 307.7 E(32554): 1.7e-83
Smith-Waterman score: 1443; 49.8% identity (75.2% similar) in 436 aa overlap (38-460:27-452)
10 20 30 40 50 60
pF1KB4 CLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTLRQCLAGR
.:::.:.. : :..::..:::::::.::.
CCDS44 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGK
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 DRNTMLAN-----KECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGEEF
. : ::. ::..:.:.:... ::.:::::::::: .::.::::.. .: .:...
CCDS44 ETNFSLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSL-QGNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 YEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYI
: ::::::.::::::::.. ..: . . :.:.::::::::::.: ::: ::.::
CCDS44 LEDSPYEPVNSRLSDIFRVVPFISDVFQQVEHIPKGNNCLDAAKACNLDDICKKYRSAYI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 SICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCS
. :. .: .. :::::::::::::::.::....: ::::::.: ::.:::::::.: ::
CCDS44 TPCTTSVS-NDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 YEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMIG
::..::::::.:. :.:...:::::::: .::. ..:.:: .:: :: .:.:.::
CCDS44 YEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIG
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 FDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVN
:::::.::: .. :.:::.: .::: ::: ::: : .: ::.:::::::::.::.
CCDS44 TVMTPNYIDSS--SLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVT
300 310 320 330 340 350
370 380 390 400 410
pF1KB4 V-SPKGP----SFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKE
: .: : . .: : ::.. : : .. . . : :. :...: : ::.: : .
CCDS44 VWQPAFPVQTTTATTTTALRVKNKPLGPA--GSENEIPTHVLPPCANLQAQKLKSNVSGN
360 370 380 390 400 410
420 430 440 450 460
pF1KB4 LSMCFTELT---TNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
.:... . .. .:. . : ..: :: .:. : ::..
CCDS44 THLCISNGNYEKEGLGASSHITTKSMAAP----PSCGLSPLLVLVVTALSTLLSLTETS
420 430 440 450 460
>>CCDS7593.1 GFRA1 gene_id:2674|Hs108|chr10 (460 aa)
initn: 1385 init1: 612 opt: 1436 Z-score: 1604.8 bits: 306.2 E(32554): 4.6e-83
Smith-Waterman score: 1436; 49.8% identity (75.5% similar) in 436 aa overlap (38-460:27-447)
10 20 30 40 50 60
pF1KB4 CLFFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTLRQCLAGR
.:::.:.. : :..::..:::::::.::.
CCDS75 MFLATLYFALPLLDLLLSAEVSGGDRLDCVKASDQCLKEQSCSTKYRTLRQCVAGK
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 DRNTMLAN-----KECQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGEEF
. : ::. ::..:.:.:... ::.:::::::::: .::.::::.. .: .:...
CCDS75 ETNFSLASGLEAKDECRSAMEALKQKSLYNCRCKRGMKKEKNCLRIYWSMYQSL-QGNDL
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 YEASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYI
: ::::::.::::::::.. ..: .. . :.:.::::::::::.: ::: ::.::
CCDS75 LEDSPYEPVNSRLSDIFRVVPFIS---VEHI--PKGNNCLDAAKACNLDDICKKYRSAYI
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 SICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCS
. :. .: .. :::::::::::::::.::....: ::::::.: ::.:::::::.: ::
CCDS75 TPCTTSVS-NDVCNRRKCHKALRQFFDKVPAKHSYGMLFCSCRDIACTERRRQTIVPVCS
180 190 200 210 220
250 260 270 280 290 300
pF1KB4 YEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMIG
::..::::::.:. :.:...:::::::: .::. ..:.:: .:: :: .:.:.::
CCDS75 YEEREKPNCLNLQDSCKTNYICRSRLADFFTNCQPESRSVSSCLKENYADCLLAYSGLIG
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB4 FDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTDVN
:::::.::: .. :.:::.: .::: ::: ::: : .: ::.:::::::::.::.
CCDS75 TVMTPNYIDSS--SLSVAPWCDCSNSGNDLEECLKFLNFFKDNTCLKNAIQAFGNGSDVT
290 300 310 320 330 340
370 380 390 400 410
pF1KB4 V-SPKGP----SFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKE
: .: : . .: : ::.. : : .. . . : :. :...: : ::.: : .
CCDS75 VWQPAFPVQTTTATTTTALRVKNKPLGPA--GSENEIPTHVLPPCANLQAQKLKSNVSGN
350 360 370 380 390 400
420 430 440 450 460
pF1KB4 LSMCFTELT---TNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
.:... . .. .:. . : ..: :: .:. : ::..
CCDS75 THLCISNGNYEKEGLGASSHITTKSMAAP----PSCGLSPLLVLVVTALSTLLSLTETS
410 420 430 440 450 460
>>CCDS13055.1 GFRA4 gene_id:64096|Hs108|chr20 (269 aa)
initn: 505 init1: 249 opt: 617 Z-score: 694.1 bits: 136.9 E(32554): 2.4e-32
Smith-Waterman score: 617; 43.0% identity (69.1% similar) in 207 aa overlap (155-358:20-222)
130 140 150 160 170 180
pF1KB4 ASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISI
:. .:.:.:::.::. . :..::: :..
CCDS13 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQ
10 20 30 40
190 200 210 220 230 240
pF1KB4 C-NREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSY
: .: . : : .:..:::.:: : : :. .::: : :::::::::..:::..
CCDS13 CLGRAAQGG--CPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAF
50 60 70 80 90 100
250 260 270 280 290 300
pF1KB4 EDK--EKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMI
:.::. . :. ...:: :: :...: . .. .: :. :: .:::..
CCDS13 SGPGPAPPSCLEPLNFCERSRVCRPRLLAFQVSCTPAPSAPDGCLLDQGARCLRAYAGLV
110 120 130 140 150 160
310 320 330 340 350 360
pF1KB4 GFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQAFGNGTDV
: .::::::. .. :.:::.: .::: .:.:: : ::.: :: .:::::..:
CCDS13 GTAVTPNYVDN--VSARVAPWCDCGASGNRREDCEAFRGLFTRNRCLDGAIQAFASGWPP
170 180 190 200 210 220
370 380 390 400 410 420
pF1KB4 NVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANNSKELSMC
CCDS13 VLLDQLNPQGDPEHSLLQVSSTGRALERRSLLSILPVLALPALL
230 240 250 260
>>CCDS4201.1 GFRA3 gene_id:2676|Hs108|chr5 (400 aa)
initn: 538 init1: 138 opt: 574 Z-score: 643.7 bits: 128.2 E(32554): 1.6e-29
Smith-Waterman score: 733; 34.6% identity (63.2% similar) in 370 aa overlap (40-394:44-393)
10 20 30 40 50 60
pF1KB4 FFFLDETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTLRQCLAGRDR
:..: . : :. .::. :. : .: ..
CCDS42 VLMLLLLLPPSPLPLAAGDPLPTESRLMNSCLQARRKCQADPTCSAAYHHLDSCTSSI--
20 30 40 50 60 70
70 80 90 100 110 120
pF1KB4 NTMLANKE------CQAALEVLQESPLYDCRCKRGMKKELQCLQIYWSIHLGLTEGEEFY
.: : ..: : : . :..: : : :.: ::... ::.:::..: . . :.
CCDS42 STPLPSEEPSVPADCLEAAQQLRNSSLIGCMCHRRMKNQVACLDIYWTVHRARSLGNYEL
80 90 100 110 120 130
130 140 150 160 170 180
pF1KB4 EASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYIS
..:::: ... . :... ... :. :: : :.:::.: .::..:
CCDS42 DVSPYEDTVTSKPWKMNLSKL-------NMLKPDSDLCLKFAMLCTLNDKCDRLRKAYGE
140 150 160 170 180
190 200 210 220 230 240
pF1KB4 ICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSC--QDQACAERRRQTILPSC
:. .: .:.:. : . : ::... .. .:.: : .:..:.::::.:: :.:
CCDS42 ACS---GP--HCQRHVCLRQLLTFFEKAAEPHAQGLLLCPCAPNDRGCGERRRNTIAPNC
190 200 210 220 230
250 260 270 280 290 300
pF1KB4 SYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVTSCPADNYQACLGSYAGMI
. ::::.:: .: .: ::::::.::...:. .. . .: : . . :: .: :.:
CCDS42 ALPPVA-PNCLELRRLCFSDPLCRSRLVDFQTHCHP-MDILGTC-ATEQSRCLRAYLGLI
240 250 260 270 280 290
310 320 330 340 350
pF1KB4 GFDMTPNYVDSSPTGIVVSPWCSCRGSGNMEEECEKFLRDFTENPCLRNAIQA---FGNG
: ::::.:.. :....: :.::::::..:::: . :..:::: .:: : : .
CCDS42 GTAMTPNFVSNVNTSVALS--CTCRGSGNLQEECEMLEGFFSHNPCLTEAIAAKMRFHSQ
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB4 TDVNVSPKGPSF----QATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQEQGLKANN
. :. :.: . .. : :. : .:. .: . :
CCDS42 LFSQDWPH-PTFAVMAHQNENPAVRPQPWVPSLFSCTLPLILLLSLW
360 370 380 390 400
420 430 440 450 460
pF1KB4 SKELSMCFTELTTNIIPGSNKVIKPNSGPSRARPSAALTVLSVLMLKLAL
>>CCDS13056.1 GFRA4 gene_id:64096|Hs108|chr20 (299 aa)
initn: 537 init1: 216 opt: 343 Z-score: 387.7 bits: 80.4 E(32554): 2.8e-15
Smith-Waterman score: 465; 36.7% identity (58.6% similar) in 237 aa overlap (155-358:20-252)
130 140 150 160 170 180
pF1KB4 ASPYEPVTSRLSDIFRLASIFSGTGADPVVSAKSNHCLDAAKACNLNDNCKKLRSSYISI
:. .:.:.:::.::. . :..::: :..
CCDS13 MVRCLGPALLLLLLLGSASSVGGNRCVDAAEACTADARCQRLRSEYVAQ
10 20 30 40
190 200 210 220 230 240
pF1KB4 C-NREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSCQDQACAERRRQTILPSCSY
: .: . : : .:..:::.:: : : :. .::: : :::::::::..:::..
CCDS13 CLGRAAQGG--CPRARCRRALRRFFARGPPALTHALLFCPCAGPACAERRRQTFVPSCAF
50 60 70 80 90 100
250 260 270 280
pF1KB4 EDK--EKPNCLDLRGVCRTDHLCR-SR------------LADFH--ANCRASYQTVTSC-
:.::. . :. ...:: .: :. : .:: ...
CCDS13 SGPGPAPPSCLEPLNFCERSRVCRCARAAAGPWRGWGRGLSPAHRPPAAQASPPGLSGLV
110 120 130 140 150 160
290 300 310 320 330
pF1KB4 -------------PADNYQACLGSYAGM-IGFDMTPNYVDSSPTGIVVSPWCSCRGSGNM
:. : : . :. : .::::::. .. :.:::.: .:::
CCDS13 HPSAQRPRRLPAGPGRPLPARLRGPRGVPAGTAVTPNYVDN--VSARVAPWCDCGASGNR
170 180 190 200 210 220
340 350 360 370 380 390
pF1KB4 EEECEKFLRDFTENPCLRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDS
.:.:: : ::.: :: .:::::..:
CCDS13 REDCEAFRGLFTRNRCLDGAIQAFASGWPPVLLDQLNPQGDPEHSLLQVSSTGRALERRS
230 240 250 260 270 280
>>CCDS4957.1 GFRAL gene_id:389400|Hs108|chr6 (394 aa)
initn: 121 init1: 68 opt: 283 Z-score: 319.0 bits: 68.1 E(32554): 1.9e-11
Smith-Waterman score: 292; 24.5% identity (52.3% similar) in 331 aa overlap (44-348:15-317)
20 30 40 50 60 70
pF1KB4 DETLRSLASPSSLQGPELHGWRPPVDCVRANELCAAESNCSSRYRTLR-QCLAGRDRNTM
:: . .::. : :: ::: :: :
CCDS49 MIVFIFLAMGLSLENEYTSQTNNCT--Y--LREQCL--RDANG-
10 20 30
80 90 100 110 120
pF1KB4 LANKECQAALEVLQES-----PLYDCRCKRGMKKELQC-LQIYWSIHLGLTEGEEFYEAS
:. : .:.... : :. :.. : :.: . .. .. : . .
CCDS49 -----CKHAWRVMEDACNDSDPGDPCK----MRNSSYCNLSIQYLVESNFQFKECLCTDD
40 50 60 70 80
130 140 150 160 170
pF1KB4 PYEPVTSRLSDIFRLASIFSGTGADPV---VSAKSNH-------CLDAAKACNLNDNCKK
: :.. :. . . ... : ....:.: ::..:.:: . :.
CCDS49 FYCTVNKLLGK--KCINKSDNVKEDKFKWNLTTRSHHGFKGMWSCLEVAEACVGDVVCNA
90 100 110 120 130 140
180 190 200 210 220 230
pF1KB4 LRSSYISICNREISPTERCNRRKCHKALRQFFDRVPSEYTYRMLFCSC--QDQACAERRR
.::.. :. . .: :. ..:. :.: :.. .: . . . ::.: .: : . ..
CCDS49 QLASYLKACSANGNP---CDLKQCQAAIRFFYQNIPFNIAQMLAFCDCAQSDIPCQQSKE
150 160 170 180 190 200
240 250 260 270 280 290
pF1KB4 QTILPSCSYEDKEKPNCLDLRGVCRTDHLCRSRLADFHANCRASYQTVT-SCPADNYQAC
.:. . :.::.. :..:.::: . :...: .: :: .: : . :
CCDS49 ALHSKTCAVNMVPPPTCLSVIRSCQNDELCRRHYRTFQSKC---WQRVTRKCHED--ENC
210 220 230 240 250
300 310 320 330 340
pF1KB4 LGSYAGM----IGFD-MTPNYVDSSPTGIVVSPWCSCRGSGNMEEE-CEKFLRDFTENPC
... . . : : :.: : :.. :.:: . :: :. : . . .. :
CCDS49 ISTLSKQDLTCSGSDDCKAAYID--ILGTVLQVQCTCRTITQSEESLCKIFQHMLHRKSC
260 270 280 290 300 310
350 360 370 380 390 400
pF1KB4 LRNAIQAFGNGTDVNVSPKGPSFQATQAPRVEKTPSLPDDLSDSTSLGTSVITTCTSVQE
.
CCDS49 FNYPTLSNVKGMALYTRKHANKITLTGFHSPFNGEVIYAAMCMTVTCGILLLVMVKLRTS
320 330 340 350 360 370
464 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:32:39 2016 done: Sat Nov 5 05:32:39 2016
Total Scan time: 3.040 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]