Result of FASTA (omim) for
pF1KB4031
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4031, 790 aa
1>>>pF1KB4031 790 - 790 aa - 790 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4163+/-0.000378; mu= 15.4950+/- 0.024
mean_var=93.2979+/-18.591, 0's: 0 Z-trim(115.5): 6 B-trim: 967 in 1/53
Lambda= 0.132782
statistics sampled from 25925 (25931) to 25925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.304), width: 16
Scan time: 11.590
The best scores are: opt bits E(85289)
NP_002477 (OMIM: 600469) nuclear cap-binding prote ( 790) 5350 1035.5 0
XP_016870224 (OMIM: 600469) PREDICTED: nuclear cap ( 723) 4856 940.8 0
XP_016870225 (OMIM: 600469) PREDICTED: nuclear cap ( 600) 3638 707.5 4.3e-203
XP_016870226 (OMIM: 600469) PREDICTED: nuclear cap ( 600) 3638 707.5 4.3e-203
XP_011517017 (OMIM: 600469) PREDICTED: nuclear cap ( 458) 3147 613.4 7e-175
XP_016870227 (OMIM: 600469) PREDICTED: nuclear cap ( 420) 2828 552.2 1.6e-156
>>NP_002477 (OMIM: 600469) nuclear cap-binding protein s (790 aa)
initn: 5350 init1: 5350 opt: 5350 Z-score: 5537.7 bits: 1035.5 E(85289): 0
Smith-Waterman score: 5350; 99.9% identity (100.0% similar) in 790 aa overlap (1-790:1-790)
10 20 30 40 50 60
pF1KB4 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDWYVYAFLSSLPWV
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
NP_002 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQM
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMI
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILA
730 740 750 760 770 780
790
pF1KB4 VFQQFCALQA
::::::::::
NP_002 VFQQFCALQA
790
>>XP_016870224 (OMIM: 600469) PREDICTED: nuclear cap-bin (723 aa)
initn: 4856 init1: 4856 opt: 4856 Z-score: 5026.9 bits: 940.8 E(85289): 0
Smith-Waterman score: 4856; 99.0% identity (99.6% similar) in 721 aa overlap (70-790:3-723)
40 50 60 70 80 90
pF1KB4 EKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYN
.. . ::::::::::::::::::::::::
XP_016 MQKIYESSARLLPEKLTIYTTLVGLLNARNYN
10 20 30
100 110 120 130 140 150
pF1KB4 FGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQED
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.
XP_016 FGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEE
40 50 60 70 80 90
160 170 180 190 200 210
pF1KB4 DVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTA
100 110 120 130 140 150
220 230 240 250 260 270
pF1KB4 DKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTED
160 170 180 190 200 210
280 290 300 310 320 330
pF1KB4 SVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVYPMPRVIFRMFDYTDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSY
220 230 240 250 260 270
340 350 360 370 380 390
pF1KB4 PGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLY
280 290 300 310 320 330
400 410 420 430 440 450
pF1KB4 MRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MRLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRL
340 350 360 370 380 390
460 470 480 490 500 510
pF1KB4 SYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFS
400 410 420 430 440 450
520 530 540 550 560 570
pF1KB4 ILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAES
460 470 480 490 500 510
580 590 600 610 620 630
pF1KB4 DEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DEGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWE
520 530 540 550 560 570
640 650 660 670 680 690
pF1KB4 ILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKV
580 590 600 610 620 630
700 710 720 730 740 750
pF1KB4 ESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ESAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQ
640 650 660 670 680 690
760 770 780 790
pF1KB4 QYMVTLENLLFTAELDPHILAVFQQFCALQA
:::::::::::::::::::::::::::::::
XP_016 QYMVTLENLLFTAELDPHILAVFQQFCALQA
700 710 720
>>XP_016870225 (OMIM: 600469) PREDICTED: nuclear cap-bin (600 aa)
initn: 3633 init1: 3633 opt: 3638 Z-score: 3767.2 bits: 707.5 E(85289): 4.3e-203
Smith-Waterman score: 3638; 93.8% identity (95.7% similar) in 577 aa overlap (214-790:30-600)
190 200 210 220 230 240
pF1KB4 LYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDR
.: :::. : : . . ..:
XP_016 MYLRCDEIGMCMHFCHLCPGLERSCTKRKMQRWTASLPT-----LKAILKDAKRLMYPC
10 20 30 40 50
250 260 270 280 290 300
pF1KB4 WQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
.. .: .. ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YR-YGLLINHIHKKSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
60 70 80 90 100 110
310 320 330 340 350 360
pF1KB4 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
120 130 140 150 160 170
370 380 390 400 410 420
pF1KB4 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
180 190 200 210 220 230
430 440 450 460 470 480
pF1KB4 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
240 250 260 270 280 290
490 500 510 520 530 540
pF1KB4 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
300 310 320 330 340 350
550 560 570 580 590 600
pF1KB4 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
360 370 380 390 400 410
610 620 630 640 650 660
pF1KB4 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
420 430 440 450 460 470
670 680 690 700 710 720
pF1KB4 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
480 490 500 510 520 530
730 740 750 760 770 780
pF1KB4 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
540 550 560 570 580 590
790
pF1KB4 QFCALQA
:::::::
XP_016 QFCALQA
600
>>XP_016870226 (OMIM: 600469) PREDICTED: nuclear cap-bin (600 aa)
initn: 3633 init1: 3633 opt: 3638 Z-score: 3767.2 bits: 707.5 E(85289): 4.3e-203
Smith-Waterman score: 3638; 93.8% identity (95.7% similar) in 577 aa overlap (214-790:30-600)
190 200 210 220 230 240
pF1KB4 LYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDR
.: :::. : : . . ..:
XP_016 MYLRCDEIGMCMHFCHLCPGLERSCTKRKMQRWTASLPT-----LKAILKDAKRLMYPC
10 20 30 40 50
250 260 270 280 290 300
pF1KB4 WQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
.. .: .. ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YR-YGLLINHIHKKSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEGPVM
60 70 80 90 100 110
310 320 330 340 350 360
pF1KB4 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELFQLP
120 130 140 150 160 170
370 380 390 400 410 420
pF1KB4 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSN
180 190 200 210 220 230
430 440 450 460 470 480
pF1KB4 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPANPTC
240 250 260 270 280 290
490 500 510 520 530 540
pF1KB4 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK
300 310 320 330 340 350
550 560 570 580 590 600
pF1KB4 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESDEGKLHVLRVMFEVWRNHPQMIAV
360 370 380 390 400 410
610 620 630 640 650 660
pF1KB4 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEAK
420 430 440 450 460 470
670 680 690 700 710 720
pF1KB4 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNLFLVIFQRFIMILTE
480 490 500 510 520 530
730 740 750 760 770 780
pF1KB4 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQYMVTLENLLFTAELDPHILAVFQ
540 550 560 570 580 590
790
pF1KB4 QFCALQA
:::::::
XP_016 QFCALQA
600
>>XP_011517017 (OMIM: 600469) PREDICTED: nuclear cap-bin (458 aa)
initn: 3147 init1: 3147 opt: 3147 Z-score: 3260.6 bits: 613.4 E(85289): 7e-175
Smith-Waterman score: 3147; 99.8% identity (100.0% similar) in 457 aa overlap (1-457:1-457)
10 20 30 40 50 60
pF1KB4 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSRRRHSDENDGGQPHKRRKTSDANETEDHLESLICKVGEKSACSLESNLEGLAGVLEAD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEDDVPQVRRDWYVYAFLSSLPWV
::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::
XP_011 YNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KDRWQERHILRPYLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDYTDDPEG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYHIVEVIFAELF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPTFSALCPAN
:::::::::::::::::::::::::::::::::::::
XP_011 LSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMS
430 440 450
490 500 510 520 530 540
pF1KB4 PTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFN
>>XP_016870227 (OMIM: 600469) PREDICTED: nuclear cap-bin (420 aa)
initn: 2828 init1: 2828 opt: 2828 Z-score: 2930.9 bits: 552.2 E(85289): 1.6e-156
Smith-Waterman score: 2828; 100.0% identity (100.0% similar) in 420 aa overlap (371-790:1-420)
350 360 370 380 390 400
pF1KB4 GKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYM
::::::::::::::::::::::::::::::
XP_016 MYTTLLIELCKLQPGSLPQVLAQATEMLYM
10 20 30
410 420 430 440 450 460
pF1KB4 RLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RLDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLS
40 50 60 70 80 90
470 480 490 500 510 520
pF1KB4 YHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YHQRILDIVPPTFSALCPANPTCIYKYGDESSNSLPGHSVALCLAVAFKSKATNDEIFSI
100 110 120 130 140 150
530 540 550 560 570 580
pF1KB4 LKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLAAKSFSHSFSALAKFHEVFKTLAESD
160 170 180 190 200 210
590 600 610 620 630 640
pF1KB4 EGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EGKLHVLRVMFEVWRNHPQMIAVLVDKMIRTQIVDCAAVANWIFSSELSRDFTRLFVWEI
220 230 240 250 260 270
650 660 670 680 690 700
pF1KB4 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSTIRKMNKHVLKIQKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVE
280 290 300 310 320 330
710 720 730 740 750 760
pF1KB4 SAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SAQSEQKNLFLVIFQRFIMILTEHLVRCETDGTSVLTPWYKNCIERLQQIFLQHHQIIQQ
340 350 360 370 380 390
770 780 790
pF1KB4 YMVTLENLLFTAELDPHILAVFQQFCALQA
::::::::::::::::::::::::::::::
XP_016 YMVTLENLLFTAELDPHILAVFQQFCALQA
400 410 420
790 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:16:22 2016 done: Thu Nov 3 14:16:23 2016
Total Scan time: 11.590 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]