FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4044, 516 aa
  1>>>pF1KB4044 516 - 516 aa - 516 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0234+/-0.000864; mu= 15.6774+/- 0.052
 mean_var=92.0078+/-18.777, 0's: 0 Z-trim(108.9): 15  B-trim: 0 in 0/50
 Lambda= 0.133709
 statistics sampled from 10504 (10508) to 10504 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.323), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS6727.2 TSTD2 gene_id:158427|Hs108|chr9         ( 516) 3585 701.8 4.9e-202


>>CCDS6727.2 TSTD2 gene_id:158427|Hs108|chr9              (516 aa)
 initn: 3585 init1: 3585 opt: 3585  Z-score: 3740.7  bits: 701.8 E(32554): 4.9e-202
Smith-Waterman score: 3585; 99.8% identity (100.0% similar) in 516 aa overlap (1-516:1-516)

               10        20        30        40        50        60
pF1KB4 MPSSTSPDQGDDLENCILRFSDLDLKDMSLINPSSSLKAELDGSTKKKYSFAKKKAFALF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MPSSTSPDQGDDLENCILRFSDLDLKDMSLINPSSSLKAELDGSTKKKYSFAKKKAFALF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VKTKEVPTKRSFECKEKLWKCCQQLFTDQTSIHRHVATQHADEIYHQTASILKQLAVTLS
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS67 VKTKEVPTKRSFECKEKLWKCCRQLFTDQTSIHRHVATQHADEIYHQTASILKQLAVTLS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 TSKSLSSADEKNPLKECLPHSHDVSAWLPDISCFNPDELISGQGSEEGEVLLYYCYHDLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 TSKSLSSADEKNPLKECLPHSHDVSAWLPDISCFNPDELISGQGSEEGEVLLYYCYHDLE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DPQWICAWQTALCQHLHLTGKIRIAAEGINGTVGGSKLATRLYVEVMLSFPLFKDDLCKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DPQWICAWQTALCQHLHLTGKIRIAAEGINGTVGGSKLATRLYVEVMLSFPLFKDDLCKD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 DFKTSKGGAHCFPELRVGVFEEIVPMGISPKKISYKKPGIHLSPGEFHKEVEKFLSQANQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 DFKTSKGGAHCFPELRVGVFEEIVPMGISPKKISYKKPGIHLSPGEFHKEVEKFLSQANQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 EQSDTILLDCRNFYESKIGRFQGCLAPDIRKFSYFPSYVDKNLELFREKRVLMYCTGGIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 EQSDTILLDCRNFYESKIGRFQGCLAPDIRKFSYFPSYVDKNLELFREKRVLMYCTGGIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 CERGSAYLKAKGVCKEVFQLKGGIHKYLEEFPDGFYKGKLFVFDERYALSYNSDVVSECS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 CERGSAYLKAKGVCKEVFQLKGGIHKYLEEFPDGFYKGKLFVFDERYALSYNSDVVSECS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 YCGARWDQYKLCSTPQCRQLVLTCPACQGQGFTACCVTCQDKGSRKVSGPMQDSFKEECE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 YCGARWDQYKLCSTPQCRQLVLTCPACQGQGFTACCVTCQDKGSRKVSGPMQDSFKEECE
              430       440       450       460       470       480

              490       500       510      
pF1KB4 CTARRPRIPRELLQHVRQPVSPEPGPDADEDGPVLM
       ::::::::::::::::::::::::::::::::::::
CCDS67 CTARRPRIPRELLQHVRQPVSPEPGPDADEDGPVLM
              490       500       510      




516 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:34:33 2016 done: Sat Nov  5 05:34:33 2016
 Total Scan time:  3.370 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]