FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4046, 445 aa
  1>>>pF1KB4046 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3588+/-0.00074; mu= 13.1752+/- 0.044
 mean_var=89.0577+/-18.252, 0's: 0 Z-trim(111.0): 8  B-trim: 575 in 1/52
 Lambda= 0.135906
 statistics sampled from 12001 (12005) to 12001 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.369), width:  16
 Scan time:  3.300

The best scores are:                                      opt bits E(32554)
CCDS4458.1 MGAT1 gene_id:4245|Hs108|chr5           ( 445) 3079 613.4 1.5e-175
CCDS531.1 POMGNT1 gene_id:55624|Hs108|chr1         ( 660)  476 103.1 8.9e-22
CCDS57995.1 POMGNT1 gene_id:55624|Hs108|chr1       ( 748)  476 103.1 9.9e-22


>>CCDS4458.1 MGAT1 gene_id:4245|Hs108|chr5                (445 aa)
 initn: 3079 init1: 3079 opt: 3079  Z-score: 3265.4  bits: 613.4 E(32554): 1.5e-175
Smith-Waterman score: 3079; 100.0% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KB4 MLKKQSAGLVLWGAILFVAWNALLLLFFWTRPAPGRPPSVSALDGDPASLTREVIRLAQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MLKKQSAGLVLWGAILFVAWNALLLLFFWTRPAPGRPPSVSALDGDPASLTREVIRLAQD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 AEVELERQRGLLQQIGDALSSQRGRVPTAAPPAQPRVPVTPAPAVIPILVIACDRSTVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 AEVELERQRGLLQQIGDALSSQRGRVPTAAPPAQPRVPVTPAPAVIPILVIACDRSTVRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 CLDKLLHYRPSAELFPIIVSQDCGHEETAQAIASYGSAVTHIRQPDLSSIAVPPDHRKFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CLDKLLHYRPSAELFPIIVSQDCGHEETAQAIASYGSAVTHIRQPDLSSIAVPPDHRKFQ
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 GYYKIARHYRWALGQVFRQFRFPAAVVVEDDLEVAPDFFEYFRATYPLLKADPSLWCVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GYYKIARHYRWALGQVFRQFRFPAAVVVEDDLEVAPDFFEYFRATYPLLKADPSLWCVSA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 WNDNGKEQMVDASRPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WNDNGKEQMVDASRPELLYRTDFFPGLGWLLLAELWAELEPKWPKAFWDDWMRRPEQRQG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 RACIRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVHFTQLDLSYLQREAYDRDFLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RACIRPEISRTMTFGRKGVSHGQFFDQHLKFIKLNQQFVHFTQLDLSYLQREAYDRDFLA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 RVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSGVPRAGYRGIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGVMDDLKSGVPRAGYRGIV
              370       380       390       400       410       420

              430       440     
pF1KB4 TFQFRGRRVHLAPPLTWEGYDPSWN
       :::::::::::::::::::::::::
CCDS44 TFQFRGRRVHLAPPLTWEGYDPSWN
              430       440     

>>CCDS531.1 POMGNT1 gene_id:55624|Hs108|chr1              (660 aa)
 initn: 425 init1: 170 opt: 476  Z-score: 504.5  bits: 103.1 E(32554): 8.9e-22
Smith-Waterman score: 519; 33.9% identity (59.6% similar) in 342 aa overlap (36-355:227-542)

          10        20        30        40        50         60    
pF1KB4 SAGLVLWGAILFVAWNALLLLFFWTRPAPGRPPSVSALDGDPASLTREV-IRLAQDAE--
                                     . :..:.  :::. :  .: .  :..::  
CCDS53 GSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSW-GDPVLLKTDVPLSSAEEAECH
        200       210       220       230        240       250     

                70        80        90       100           110     
pF1KB4 ---VELERQRGLLQQIGDALSSQRGRVPTAAPPAQPRVPVTPAPAV----IPILVIACDR
          .::.:.:   ... . . .  : : .   :.  .    : :      .:. ::: .:
CCDS53 WADTELNRRR---RRFCSKVEGY-GSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNR
         260          270        280       290       300       310 

          120       130        140       150       160       170   
pF1KB4 ST-VRRCLDKLLHYRP-SAELFPIIVSQDCGHEETAQAIASYGSAVTHIRQPDLSSIAVP
        . . : : .::  .  : ... ...  :  .::  ...: .:     .:  . . :.. 
CCDS53 PNYLYRMLRSLLSAQGVSPQMITVFI--DGYYEEPMDVVALFG-----LRGIQHTPISIK
             320       330         340       350            360    

           180       190       200          210       220       230
pF1KB4 PDHRKFQGYYKIARHYRWALGQVFRQF---RFPAAVVVEDDLEVAPDFFEYFRATYPLLK
                 ....::. .:  .:  :   .:  :::.:.::..: ::: ..  .  ::.
CCDS53 NA--------RVSQHYKASLTATFNLFPEAKF--AVVLEEDLDIAVDFFSFLSQSIHLLE
                  370       380         390       400       410    

              240       250       260       270        280         
pF1KB4 ADPSLWCVSAWNDNGKEQMVDASRPELLYRTDFFPGLGWLLLAELWAE-LEPKWPKAF--
        : ::.:.:::::.: :.   :  : ::::.. .:::::.:   :. : ::::::     
CCDS53 EDDSLYCISAWNDQGYEH--TAEDPALLYRVETMPGLGWVLRRSLYKEELEPKWPTPEKL
          420       430         440       450       460       470  

         290       300       310       320        330       340    
pF1KB4 --WDDWMRRPEQRQGRACIRPEISRTMTFGRKGVS-HGQFFDQHLKFIKLNQQFVHFTQL
         :: ::: ::::.:: :: :..::.. ::  :.. .: : . ..:  :.:   :  .::
CCDS53 WDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFNT--VPGVQL
            480       490       500       510       520         530

           350       360       370       380       390       400   
pF1KB4 -DLSYLQREAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGV
        ... :..:::.                                                
CCDS53 RNVDSLKKEAYEVEVHRLLSEAEVLDHSKNPCEDSFLPDTEGHTYVAFIRMEKDDDFTTW
              540       550       560       570       580       590

>>CCDS57995.1 POMGNT1 gene_id:55624|Hs108|chr1            (748 aa)
 initn: 425 init1: 170 opt: 476  Z-score: 503.6  bits: 103.1 E(32554): 9.9e-22
Smith-Waterman score: 519; 33.9% identity (59.6% similar) in 342 aa overlap (36-355:227-542)

          10        20        30        40        50         60    
pF1KB4 SAGLVLWGAILFVAWNALLLLFFWTRPAPGRPPSVSALDGDPASLTREV-IRLAQDAE--
                                     . :..:.  :::. :  .: .  :..::  
CCDS57 GSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSW-GDPVLLKTDVPLSSAEEAECH
        200       210       220       230        240       250     

                70        80        90       100           110     
pF1KB4 ---VELERQRGLLQQIGDALSSQRGRVPTAAPPAQPRVPVTPAPAV----IPILVIACDR
          .::.:.:   ... . . .  : : .   :.  .    : :      .:. ::: .:
CCDS57 WADTELNRRR---RRFCSKVEGY-GSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNR
         260          270        280       290       300       310 

          120       130        140       150       160       170   
pF1KB4 ST-VRRCLDKLLHYRP-SAELFPIIVSQDCGHEETAQAIASYGSAVTHIRQPDLSSIAVP
        . . : : .::  .  : ... ...  :  .::  ...: .:     .:  . . :.. 
CCDS57 PNYLYRMLRSLLSAQGVSPQMITVFI--DGYYEEPMDVVALFG-----LRGIQHTPISIK
             320       330         340       350            360    

           180       190       200          210       220       230
pF1KB4 PDHRKFQGYYKIARHYRWALGQVFRQF---RFPAAVVVEDDLEVAPDFFEYFRATYPLLK
                 ....::. .:  .:  :   .:  :::.:.::..: ::: ..  .  ::.
CCDS57 NA--------RVSQHYKASLTATFNLFPEAKF--AVVLEEDLDIAVDFFSFLSQSIHLLE
                  370       380         390       400       410    

              240       250       260       270        280         
pF1KB4 ADPSLWCVSAWNDNGKEQMVDASRPELLYRTDFFPGLGWLLLAELWAE-LEPKWPKAF--
        : ::.:.:::::.: :.   :  : ::::.. .:::::.:   :. : ::::::     
CCDS57 EDDSLYCISAWNDQGYEH--TAEDPALLYRVETMPGLGWVLRRSLYKEELEPKWPTPEKL
          420       430         440       450       460       470  

         290       300       310       320        330       340    
pF1KB4 --WDDWMRRPEQRQGRACIRPEISRTMTFGRKGVS-HGQFFDQHLKFIKLNQQFVHFTQL
         :: ::: ::::.:: :: :..::.. ::  :.. .: : . ..:  :.:   :  .::
CCDS57 WDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFNT--VPGVQL
            480       490       500       510       520         530

           350       360       370       380       390       400   
pF1KB4 -DLSYLQREAYDRDFLARVYGAPQLQVEKVRTNDRKELGEVRVQYTGRDSFKAFAKALGV
        ... :..:::.                                                
CCDS57 RNVDSLKKEAYEVEVHRLLSEAEVLDHSKNPCEDSFLPDTEGHTYVAFIRMEKDDDFTTW
              540       550       560       570       580       590




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:48:41 2016 done: Fri Nov  4 02:48:41 2016
 Total Scan time:  3.300 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]