Result of FASTA (omim) for
pF1KB4062
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4062, 175 aa
1>>>pF1KB4062 175 - 175 aa - 175 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1321+/-0.000427; mu= 14.0663+/- 0.027
mean_var=90.6191+/-20.288, 0's: 0 Z-trim(112.0): 240 B-trim: 1382 in 2/48
Lambda= 0.134730
statistics sampled from 20432 (20817) to 20432 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.244), width: 16
Scan time: 5.140
The best scores are: opt bits E(85289)
NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 ( 175) 1173 237.9 6.4e-63
XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 181) 860 177.1 1.4e-44
NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 ( 181) 860 177.1 1.4e-44
NP_001019398 (OMIM: 103180) ADP-ribosylation facto ( 181) 856 176.3 2.3e-44
NP_001019397 (OMIM: 103180) ADP-ribosylation facto ( 181) 856 176.3 2.3e-44
NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 ( 181) 856 176.3 2.3e-44
NP_001019399 (OMIM: 103180) ADP-ribosylation facto ( 181) 856 176.3 2.3e-44
NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 ( 180) 809 167.1 1.3e-41
NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 ( 180) 797 164.8 6.5e-41
NP_001168 (OMIM: 603425) ADP-ribosylation factor-l ( 181) 668 139.7 2.3e-33
XP_006719454 (OMIM: 103190) PREDICTED: ADP-ribosyl ( 137) 634 133.0 1.9e-31
XP_005248554 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 398) 632 133.1 5.1e-31
NP_001647 (OMIM: 601747) E3 ubiquitin-protein liga ( 574) 632 133.3 6.6e-31
XP_016856722 (OMIM: 103180) PREDICTED: ADP-ribosyl ( 212) 623 131.1 1.1e-30
NP_150230 (OMIM: 601747) E3 ubiquitin-protein liga ( 569) 567 120.6 4.2e-27
XP_016864933 (OMIM: 601747) PREDICTED: E3 ubiquiti ( 569) 567 120.6 4.2e-27
NP_079323 (OMIM: 614439) ADP-ribosylation factor-l ( 192) 558 118.4 6.6e-27
NP_848930 (OMIM: 608909) ADP-ribosylation factor-l ( 179) 552 117.2 1.4e-26
NP_036229 (OMIM: 608960) ADP-ribosylation factor-l ( 179) 550 116.8 1.8e-26
NP_150231 (OMIM: 601747) E3 ubiquitin-protein liga ( 546) 540 115.4 1.5e-25
NP_001658 (OMIM: 601175) ADP-ribosylation factor-l ( 184) 528 112.5 3.6e-25
NP_005728 (OMIM: 604787) ADP-ribosylation factor-l ( 192) 527 112.4 4.3e-25
NP_001269360 (OMIM: 604787) ADP-ribosylation facto ( 201) 527 112.4 4.4e-25
NP_004302 (OMIM: 604695) ADP-ribosylation factor-l ( 182) 514 109.8 2.4e-24
XP_016871749 (OMIM: 604695) PREDICTED: ADP-ribosyl ( 182) 514 109.8 2.4e-24
NP_001182325 (OMIM: 604786) ADP-ribosylation facto ( 200) 504 107.9 9.8e-24
NP_005729 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 504 107.9 9.8e-24
NP_001032241 (OMIM: 604786) ADP-ribosylation facto ( 200) 504 107.9 9.8e-24
NP_997625 (OMIM: 604786) ADP-ribosylation factor-l ( 200) 504 107.9 9.8e-24
NP_001287997 (OMIM: 603425) ADP-ribosylation facto ( 135) 478 102.7 2.5e-22
NP_612459 (OMIM: 609351) ADP-ribosylation factor-l ( 196) 471 101.5 8.2e-22
XP_005266310 (OMIM: 609351) PREDICTED: ADP-ribosyl ( 196) 471 101.5 8.2e-22
XP_011523084 (OMIM: 600732) PREDICTED: ADP-ribosyl ( 201) 452 97.8 1.1e-20
NP_001652 (OMIM: 600732) ADP-ribosylation factor-l ( 201) 452 97.8 1.1e-20
XP_016862800 (OMIM: 209900,268000,600151,608845,61 ( 186) 448 97.0 1.8e-20
NP_001265222 (OMIM: 209900,268000,600151,608845,61 ( 186) 448 97.0 1.8e-20
NP_816931 (OMIM: 209900,268000,600151,608845,61357 ( 186) 448 97.0 1.8e-20
NP_115522 (OMIM: 209900,268000,600151,608845,61357 ( 186) 448 97.0 1.8e-20
NP_001310442 (OMIM: 209900,268000,600151,608845,61 ( 193) 446 96.6 2.4e-20
NP_001032251 (OMIM: 608960) ADP-ribosylation facto ( 142) 444 96.1 2.5e-20
NP_817114 (OMIM: 608960) ADP-ribosylation factor-l ( 142) 444 96.1 2.5e-20
XP_005252458 (OMIM: 608909) PREDICTED: ADP-ribosyl ( 142) 444 96.1 2.5e-20
NP_060654 (OMIM: 616596) ADP-ribosylation factor-l ( 186) 418 91.2 1e-18
NP_620150 (OMIM: 616597) ADP-ribosylation factor-l ( 186) 402 88.0 8.7e-18
XP_016862801 (OMIM: 209900,268000,600151,608845,61 ( 159) 389 85.5 4.5e-17
NP_001310443 (OMIM: 209900,268000,600151,608845,61 ( 159) 389 85.5 4.5e-17
XP_011526784 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 357 79.3 3.9e-15
XP_011526785 (OMIM: 604699) PREDICTED: ADP-ribosyl ( 201) 357 79.3 3.9e-15
NP_001254477 (OMIM: 604699) ADP-ribosylation facto ( 201) 357 79.3 3.9e-15
NP_003215 (OMIM: 604699) ADP-ribosylation factor-r ( 201) 357 79.3 3.9e-15
>>NP_001654 (OMIM: 600464) ADP-ribosylation factor 6 [Ho (175 aa)
initn: 1173 init1: 1173 opt: 1173 Z-score: 1250.6 bits: 237.9 E(85289): 6.4e-63
Smith-Waterman score: 1173; 100.0% identity (100.0% similar) in 175 aa overlap (1-175:1-175)
10 20 30 40 50 60
pF1KB4 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIF
70 80 90 100 110 120
130 140 150 160 170
pF1KB4 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
130 140 150 160 170
>>XP_005268913 (OMIM: 103190) PREDICTED: ADP-ribosylatio (181 aa)
initn: 897 init1: 836 opt: 860 Z-score: 921.6 bits: 177.1 E(85289): 1.4e-44
Smith-Waterman score: 860; 69.5% identity (90.2% similar) in 174 aa overlap (2-175:6-179)
10 20 30 40 50
pF1KB4 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
:..:....:.:::::::.:::::::::::::::::. ::::::.::::::: :::
XP_005 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
XP_005 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... :.
XP_005 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
XP_005 K
>>NP_001650 (OMIM: 103190) ADP-ribosylation factor 3 [Ho (181 aa)
initn: 897 init1: 836 opt: 860 Z-score: 921.6 bits: 177.1 E(85289): 1.4e-44
Smith-Waterman score: 860; 69.5% identity (90.2% similar) in 174 aa overlap (2-175:6-179)
10 20 30 40 50
pF1KB4 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
:..:....:.:::::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... :.
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNK
130 140 150 160 170 180
NP_001 K
>>NP_001019398 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 876 init1: 851 opt: 856 Z-score: 917.4 bits: 176.3 E(85289): 2.3e-44
Smith-Waterman score: 856; 67.6% identity (88.3% similar) in 179 aa overlap (1-175:1-179)
10 20 30 40 50
pF1KB4 MGKVLSKIF----GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
::......: :.:::::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... ..
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001019397 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 876 init1: 851 opt: 856 Z-score: 917.4 bits: 176.3 E(85289): 2.3e-44
Smith-Waterman score: 856; 67.6% identity (88.3% similar) in 179 aa overlap (1-175:1-179)
10 20 30 40 50
pF1KB4 MGKVLSKIF----GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
::......: :.:::::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... ..
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001649 (OMIM: 103180) ADP-ribosylation factor 1 [Ho (181 aa)
initn: 876 init1: 851 opt: 856 Z-score: 917.4 bits: 176.3 E(85289): 2.3e-44
Smith-Waterman score: 856; 67.6% identity (88.3% similar) in 179 aa overlap (1-175:1-179)
10 20 30 40 50
pF1KB4 MGKVLSKIF----GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
::......: :.:::::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... ..
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001019399 (OMIM: 103180) ADP-ribosylation factor 1 (181 aa)
initn: 876 init1: 851 opt: 856 Z-score: 917.4 bits: 176.3 E(85289): 2.3e-44
Smith-Waterman score: 856; 67.6% identity (88.3% similar) in 179 aa overlap (1-175:1-179)
10 20 30 40 50
pF1KB4 MGKVLSKIF----GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
::......: :.:::::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
..:.:::::::::::::::::. .::::::::: ::.:..:::.:: :.. . :.:::.
NP_001 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.::. :: .:::: .: ::::.: .:::::::::::: ::... ..
NP_001 LLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQ
130 140 150 160 170 180
NP_001 K
>>NP_001653 (OMIM: 103188) ADP-ribosylation factor 5 [Ho (180 aa)
initn: 840 init1: 799 opt: 809 Z-score: 868.1 bits: 167.1 E(85289): 1.3e-41
Smith-Waterman score: 809; 67.1% identity (90.4% similar) in 167 aa overlap (4-170:8-174)
10 20 30 40 50
pF1KB4 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
..:.:::.:.:::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGLTVSALFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
. :.:::::::::::::::::. .::::::::: ::.:..:. .::...... :.:::.
NP_001 ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::.:.:: :. .:::: ..:.:.:::: .:::.: :::.:: ::.
NP_001 LLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR
130 140 150 160 170 180
>>NP_001651 (OMIM: 601177) ADP-ribosylation factor 4 [Ho (180 aa)
initn: 825 init1: 783 opt: 797 Z-score: 855.5 bits: 164.8 E(85289): 6.5e-41
Smith-Waterman score: 797; 65.5% identity (88.9% similar) in 171 aa overlap (1-171:5-175)
10 20 30 40 50
pF1KB4 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
.....:..::.:.:::::.:::::::::::::::::. ::::::.::::::: :::
NP_001 MGLTISSLFSRLFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
. :.::::::::.:::::.::. .::::::::: ::.::.:. .::.... :.:::.
NP_001 ICFTVWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
.:.::::::::.:: :. .:::: .:.:.:::: .:::.: :::::: ::..
NP_001 LLLFANKQDLPNAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR
130 140 150 160 170 180
>>NP_001168 (OMIM: 603425) ADP-ribosylation factor-like (181 aa)
initn: 668 init1: 668 opt: 668 Z-score: 719.9 bits: 139.7 E(85289): 2.3e-33
Smith-Waterman score: 668; 55.2% identity (84.3% similar) in 172 aa overlap (4-175:8-179)
10 20 30 40 50
pF1KB4 MGKVLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN
..:..::..:::::.::::.::::::::.:..:. ::::::.:::::::::::
NP_001 MGGFFSSIFSSLFGTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKN
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 VKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI
.::.:::.::: .::: :: ::..:...:.::: ::::: ...:: .....:.: ::
NP_001 LKFQVWDLGGQTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 ILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKS
...::::::. .:: :. ..::: ..::.: . . ::.: :: :.. ::. . ::
NP_001 LVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSR
130 140 150 160 170 180
NP_001 Q
175 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:50:26 2016 done: Fri Nov 4 02:50:27 2016
Total Scan time: 5.140 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]