Result of FASTA (ccds) for
pF1KB4084
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4084, 969 aa
1>>>pF1KB4084 969 - 969 aa - 969 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6298+/-0.00101; mu= 15.7973+/- 0.061
mean_var=102.3275+/-20.422, 0's: 0 Z-trim(107.0): 22 B-trim: 0 in 0/49
Lambda= 0.126788
statistics sampled from 9291 (9302) to 9291 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.286), width: 16
Scan time: 4.560
The best scores are: opt bits E(32554)
CCDS7072.1 FBXO18 gene_id:84893|Hs108|chr10 (1043) 6499 1200.0 0
CCDS7073.1 FBXO18 gene_id:84893|Hs108|chr10 (1094) 6499 1200.1 0
CCDS73064.1 FBXO18 gene_id:84893|Hs108|chr10 ( 986) 5341 988.2 0
>>CCDS7072.1 FBXO18 gene_id:84893|Hs108|chr10 (1043 aa)
initn: 6499 init1: 6499 opt: 6499 Z-score: 6423.3 bits: 1200.0 E(32554): 0
Smith-Waterman score: 6499; 100.0% identity (100.0% similar) in 969 aa overlap (1-969:75-1043)
10 20 30
pF1KB4 MAKSNSVGQDSCQDSEGDMIFPAESSCALP
::::::::::::::::::::::::::::::
CCDS70 PRTKRGSRGQGSQRCIPEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALP
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB4 QEGSAGPGSPGSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 QEGSAGPGSPGSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQ
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB4 EAEDSTSRLSAESGETDQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EAEDSTSRLSAESGETDQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVF
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB4 AFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEK
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB4 ESDLCVLNLIRYTATTKCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ESDLCVLNLIRYTATTKCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNI
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB4 WALVAAVVLLSSSVNDIQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 WALVAAVVLLSSSVNDIQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNR
350 360 370 380 390 400
340 350 360 370 380 390
pF1KB4 IHYNIFYCLYLQENSCTQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 IHYNIFYCLYLQENSCTQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAF
410 420 430 440 450 460
400 410 420 430 440 450
pF1KB4 AGTGKTSTLVKYAEKWSQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AGTGKTSTLVKYAEKWSQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQ
470 480 490 500 510 520
460 470 480 490 500 510
pF1KB4 SKKKLNLFKLTPFMVNSVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SKKKLNLFKLTPFMVNSVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQ
530 540 550 560 570 580
520 530 540 550 560 570
pF1KB4 GQRVMVEQSEKLNGVLEASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GQRVMVEQSEKLNGVLEASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAI
590 600 610 620 630 640
580 590 600 610 620 630
pF1KB4 FVDEAQDCTPAIMNIVLSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 FVDEAQDCTPAIMNIVLSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRF
650 660 670 680 690 700
640 650 660 670 680 690
pF1KB4 GVEIAYVGATILDVCKRVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GVEIAYVGATILDVCKRVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEG
710 720 730 740 750 760
700 710 720 730 740 750
pF1KB4 EFPSRIHLIGGIKSFGLDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EFPSRIHLIGGIKSFGLDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRY
770 780 790 800 810 820
760 770 780 790 800 810
pF1KB4 VTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVH
830 840 850 860 870 880
820 830 840 850 860 870
pF1KB4 VLDDFVKVPCARHNLPQLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VLDDFVKVPCARHNLPQLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGE
890 900 910 920 930 940
880 890 900 910 920 930
pF1KB4 YFLQAELTSNVLKTGVVRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 YFLQAELTSNVLKTGVVRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAE
950 960 970 980 990 1000
940 950 960
pF1KB4 QRIGPLAFLTASPEQVRAMERTVENIVLPRHEALLFLVF
:::::::::::::::::::::::::::::::::::::::
CCDS70 QRIGPLAFLTASPEQVRAMERTVENIVLPRHEALLFLVF
1010 1020 1030 1040
>>CCDS7073.1 FBXO18 gene_id:84893|Hs108|chr10 (1094 aa)
initn: 6499 init1: 6499 opt: 6499 Z-score: 6423.0 bits: 1200.1 E(32554): 0
Smith-Waterman score: 6499; 100.0% identity (100.0% similar) in 969 aa overlap (1-969:126-1094)
10 20 30
pF1KB4 MAKSNSVGQDSCQDSEGDMIFPAESSCALP
::::::::::::::::::::::::::::::
CCDS70 PRTKRGSRGQGSQRCIPEFFLAGKQPCTNDMAKSNSVGQDSCQDSEGDMIFPAESSCALP
100 110 120 130 140 150
40 50 60 70 80 90
pF1KB4 QEGSAGPGSPGSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 QEGSAGPGSPGSAPPSRKRSWSSEEESNQATGTSRWDGVSKKAPRHHLSVPCTRPREARQ
160 170 180 190 200 210
100 110 120 130 140 150
pF1KB4 EAEDSTSRLSAESGETDQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EAEDSTSRLSAESGETDQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSEVLRHVF
220 230 240 250 260 270
160 170 180 190 200 210
pF1KB4 AFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AFLPVEDLYWNLSLVCHLWREIISDPLFIPWKKLYHRYLMNEEQAVSKVDGILSNCGIEK
280 290 300 310 320 330
220 230 240 250 260 270
pF1KB4 ESDLCVLNLIRYTATTKCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ESDLCVLNLIRYTATTKCSPSVDPERVLWSLRDHPLLPEAEACVRQHLPDLYAAAGGVNI
340 350 360 370 380 390
280 290 300 310 320 330
pF1KB4 WALVAAVVLLSSSVNDIQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 WALVAAVVLLSSSVNDIQRLLFCLRRPSSTVTMPDVTETLYCIAVLLYAMREKGINISNR
400 410 420 430 440 450
340 350 360 370 380 390
pF1KB4 IHYNIFYCLYLQENSCTQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 IHYNIFYCLYLQENSCTQATKVKEEPSVWPGKKTIQLTHEQQLILNHKMEPLQVVKIMAF
460 470 480 490 500 510
400 410 420 430 440 450
pF1KB4 AGTGKTSTLVKYAEKWSQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AGTGKTSTLVKYAEKWSQSRFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQ
520 530 540 550 560 570
460 470 480 490 500 510
pF1KB4 SKKKLNLFKLTPFMVNSVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SKKKLNLFKLTPFMVNSVLAEGKGGFIRAKLVCKTLENFFASADEELTIDHVPIWCKNSQ
580 590 600 610 620 630
520 530 540 550 560 570
pF1KB4 GQRVMVEQSEKLNGVLEASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GQRVMVEQSEKLNGVLEASRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAI
640 650 660 670 680 690
580 590 600 610 620 630
pF1KB4 FVDEAQDCTPAIMNIVLSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 FVDEAQDCTPAIMNIVLSQPCGKIFVGDPHQQIYTFRGAVNALFTVPHTHVFYLTQSFRF
700 710 720 730 740 750
640 650 660 670 680 690
pF1KB4 GVEIAYVGATILDVCKRVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 GVEIAYVGATILDVCKRVRKKTLVGGNHQSGIRGDAKGQVALLSRTNANVFDEAVRVTEG
760 770 780 790 800 810
700 710 720 730 740 750
pF1KB4 EFPSRIHLIGGIKSFGLDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EFPSRIHLIGGIKSFGLDRIIDIWILLQPEEERRKQNLVIKDKFIRRWVHKEGFSGFKRY
820 830 840 850 860 870
760 770 780 790 800 810
pF1KB4 VTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VTAAEDKELEAKIAVVEKYNIRIPELVQRIEKCHIEDLDFAEYILGTVHKAKGLEFDTVH
880 890 900 910 920 930
820 830 840 850 860 870
pF1KB4 VLDDFVKVPCARHNLPQLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VLDDFVKVPCARHNLPQLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGE
940 950 960 970 980 990
880 890 900 910 920 930
pF1KB4 YFLQAELTSNVLKTGVVRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 YFLQAELTSNVLKTGVVRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAE
1000 1010 1020 1030 1040 1050
940 950 960
pF1KB4 QRIGPLAFLTASPEQVRAMERTVENIVLPRHEALLFLVF
:::::::::::::::::::::::::::::::::::::::
CCDS70 QRIGPLAFLTASPEQVRAMERTVENIVLPRHEALLFLVF
1060 1070 1080 1090
>>CCDS73064.1 FBXO18 gene_id:84893|Hs108|chr10 (986 aa)
initn: 5330 init1: 5330 opt: 5341 Z-score: 5278.9 bits: 988.2 E(32554): 0
Smith-Waterman score: 6455; 98.3% identity (98.3% similar) in 986 aa overlap (1-969:1-986)
10 20 30 40 50 60
pF1KB4 MAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPSRKRSWSSEEESNQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAKSNSVGQDSCQDSEGDMIFPAESSCALPQEGSAGPGSPGSAPPSRKRSWSSEEESNQA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 TGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPDPIPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TGTSRWDGVSKKAPRHHLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPDPIPD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 SYYGLLGTLPCQEALSHICSLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFIP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 WKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATTKCSPSVDPERVLWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 WKKLYHRYLMNEEQAVSKVDGILSNCGIEKESDLCVLNLIRYTATTKCSPSVDPERVLWS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVNDIQRLLFCLRRPSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LRDHPLLPEAEACVRQHLPDLYAAAGGVNIWALVAAVVLLSSSVNDIQRLLFCLRRPSST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 VTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSCTQATKVKEEPSVWP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VTMPDVTETLYCIAVLLYAMREKGINISNRIHYNIFYCLYLQENSCTQATKVKEEPSVWP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 GKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKWSQSRFLYVTFNKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GKKTIQLTHEQQLILNHKMEPLQVVKIMAFAGTGKTSTLVKYAEKWSQSRFLYVTFNKSI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 AKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVNSVLAEGKGGFIRAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVNSVLAEGKGGFIRAK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 LVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVLEASRLWDNMRKLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LVCKTLENFFASADEELTIDHVPIWCKNSQGQRVMVEQSEKLNGVLEASRLWDNMRKLGE
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 CTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIVLSQPCGKIFVGDPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 CTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQDCTPAIMNIVLSQPCGKIFVGDPH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 QQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCKRVRKKTLVGGNHQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QQIYTFRGAVNALFTVPHTHVFYLTQSFRFGVEIAYVGATILDVCKRVRKKTLVGGNHQS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 GIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFGLDRIIDIWILLQPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 GIRGDAKGQVALLSRTNANVFDEAVRVTEGEFPSRIHLIGGIKSFGLDRIIDIWILLQPE
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 EERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EERRKQNLVIKDKFIRRWVHKEGFSGFKRYVTAAEDKELEAKIAVVEKYNIRIPELVQRI
730 740 750 760 770 780
790 800 810 820
pF1KB4 EKCHIEDLDFAE-----------------YILGTVHKAKGLEFDTVHVLDDFVKVPCARH
:::::::::::: :::::::::::::::::::::::::::::::
CCDS73 EKCHIEDLDFAEMESHHVGQAGLELPTSEYILGTVHKAKGLEFDTVHVLDDFVKVPCARH
790 800 810 820 830 840
830 840 850 860 870 880
pF1KB4 NLPQLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NLPQLPHFRVESFSEDEWNLLYVAVTRAKKRLIMTKSLENILTLAGEYFLQAELTSNVLK
850 860 870 880 890 900
890 900 910 920 930 940
pF1KB4 TGVVRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 TGVVRCCVGQCNNAIPVDTVLTMKKLPITYSNRKENKGGYLCHSCAEQRIGPLAFLTASP
910 920 930 940 950 960
950 960
pF1KB4 EQVRAMERTVENIVLPRHEALLFLVF
::::::::::::::::::::::::::
CCDS73 EQVRAMERTVENIVLPRHEALLFLVF
970 980
969 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:21:27 2016 done: Thu Nov 3 14:21:28 2016
Total Scan time: 4.560 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]