Result of FASTA (omim) for
pF1KB4092
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4092, 415 aa
1>>>pF1KB4092 415 - 415 aa - 415 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9515+/-0.000368; mu= 20.0853+/- 0.023
mean_var=85.6314+/-19.412, 0's: 0 Z-trim(113.5): 94 B-trim: 2532 in 2/50
Lambda= 0.138598
statistics sampled from 22789 (22913) to 22789 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.269), width: 16
Scan time: 6.570
The best scores are: opt bits E(85289)
NP_001091674 (OMIM: 601037) heterogeneous nuclear ( 415) 2815 573.0 4.7e-163
NP_001091676 (OMIM: 601037) heterogeneous nuclear ( 415) 2815 573.0 4.7e-163
NP_001091677 (OMIM: 601037) heterogeneous nuclear ( 415) 2815 573.0 4.7e-163
NP_001091675 (OMIM: 601037) heterogeneous nuclear ( 415) 2815 573.0 4.7e-163
NP_001091678 (OMIM: 601037) heterogeneous nuclear ( 415) 2815 573.0 4.7e-163
NP_004957 (OMIM: 601037) heterogeneous nuclear rib ( 415) 2815 573.0 4.7e-163
XP_016864908 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 2245 459.1 9.8e-129
XP_006714926 (OMIM: 601035) PREDICTED: heterogeneo ( 429) 2245 459.1 9.8e-129
XP_016864903 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 2237 457.5 3.1e-128
XP_006714925 (OMIM: 601035) PREDICTED: heterogeneo ( 452) 2237 457.5 3.1e-128
XP_016864905 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2128 435.7 1.1e-121
NP_005511 (OMIM: 601035) heterogeneous nuclear rib ( 449) 2128 435.7 1.1e-121
NP_001244222 (OMIM: 601035) heterogeneous nuclear ( 449) 2128 435.7 1.1e-121
XP_016864904 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2128 435.7 1.1e-121
XP_016864906 (OMIM: 601035) PREDICTED: heterogeneo ( 449) 2128 435.7 1.1e-121
XP_011532844 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2128 435.7 1.2e-121
XP_011532846 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2128 435.7 1.2e-121
XP_011532848 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2128 435.7 1.2e-121
XP_011532847 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2128 435.7 1.2e-121
XP_005265952 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2128 435.7 1.2e-121
XP_005265953 (OMIM: 601035) PREDICTED: heterogeneo ( 472) 2128 435.7 1.2e-121
XP_016864907 (OMIM: 601035) PREDICTED: heterogeneo ( 439) 2119 433.9 3.8e-121
XP_011532849 (OMIM: 601035) PREDICTED: heterogeneo ( 462) 2119 433.9 4e-121
NP_001027565 (OMIM: 300610,300986) heterogeneous n ( 449) 2073 424.7 2.3e-118
NP_062543 (OMIM: 300610,300986) heterogeneous nucl ( 449) 2073 424.7 2.3e-118
XP_016864913 (OMIM: 601035) PREDICTED: heterogeneo ( 266) 1226 255.1 1.5e-67
NP_001309363 (OMIM: 602324) heterogeneous nuclear ( 346) 1215 253.0 8.5e-67
NP_001309366 (OMIM: 602324) heterogeneous nuclear ( 346) 1215 253.0 8.5e-67
NP_001309365 (OMIM: 602324) heterogeneous nuclear ( 346) 1215 253.0 8.5e-67
XP_016871657 (OMIM: 602324) PREDICTED: heterogeneo ( 346) 1215 253.0 8.5e-67
NP_036339 (OMIM: 602324) heterogeneous nuclear rib ( 346) 1215 253.0 8.5e-67
NP_001309371 (OMIM: 602324) heterogeneous nuclear ( 340) 1205 251.0 3.3e-66
NP_001309372 (OMIM: 602324) heterogeneous nuclear ( 340) 1205 251.0 3.3e-66
XP_016864914 (OMIM: 601035) PREDICTED: heterogeneo ( 228) 1120 233.8 3.3e-61
XP_016864909 (OMIM: 601035) PREDICTED: heterogeneo ( 251) 1112 232.3 1.1e-60
XP_016864910 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 1003 210.5 3.9e-54
XP_016864911 (OMIM: 601035) PREDICTED: heterogeneo ( 248) 1003 210.5 3.9e-54
XP_005265958 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 1003 210.5 4.1e-54
XP_005265959 (OMIM: 601035) PREDICTED: heterogeneo ( 271) 1003 210.5 4.1e-54
XP_016864912 (OMIM: 601035) PREDICTED: heterogeneo ( 238) 994 208.6 1.3e-53
NP_001309369 (OMIM: 602324) heterogeneous nuclear ( 331) 653 140.6 5.5e-33
NP_001309368 (OMIM: 602324) heterogeneous nuclear ( 331) 653 140.6 5.5e-33
NP_001309367 (OMIM: 602324) heterogeneous nuclear ( 331) 653 140.6 5.5e-33
NP_067676 (OMIM: 602324) heterogeneous nuclear rib ( 331) 653 140.6 5.5e-33
NP_001309370 (OMIM: 602324) heterogeneous nuclear ( 331) 653 140.6 5.5e-33
NP_002083 (OMIM: 604851) G-rich sequence factor 1 ( 480) 629 136.0 2e-31
XP_005265738 (OMIM: 604851) PREDICTED: G-rich sequ ( 561) 629 136.0 2.2e-31
NP_001309377 (OMIM: 602324) heterogeneous nuclear ( 215) 604 130.6 3.7e-30
XP_016871658 (OMIM: 602324) PREDICTED: heterogeneo ( 215) 604 130.6 3.7e-30
NP_001309378 (OMIM: 602324) heterogeneous nuclear ( 215) 604 130.6 3.7e-30
>>NP_001091674 (OMIM: 601037) heterogeneous nuclear ribo (415 aa)
initn: 2815 init1: 2815 opt: 2815 Z-score: 3048.3 bits: 573.0 E(85289): 4.7e-163
Smith-Waterman score: 2815; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
370 380 390 400 410
>>NP_001091676 (OMIM: 601037) heterogeneous nuclear ribo (415 aa)
initn: 2815 init1: 2815 opt: 2815 Z-score: 3048.3 bits: 573.0 E(85289): 4.7e-163
Smith-Waterman score: 2815; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
370 380 390 400 410
>>NP_001091677 (OMIM: 601037) heterogeneous nuclear ribo (415 aa)
initn: 2815 init1: 2815 opt: 2815 Z-score: 3048.3 bits: 573.0 E(85289): 4.7e-163
Smith-Waterman score: 2815; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
370 380 390 400 410
>>NP_001091675 (OMIM: 601037) heterogeneous nuclear ribo (415 aa)
initn: 2815 init1: 2815 opt: 2815 Z-score: 3048.3 bits: 573.0 E(85289): 4.7e-163
Smith-Waterman score: 2815; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
370 380 390 400 410
>>NP_001091678 (OMIM: 601037) heterogeneous nuclear ribo (415 aa)
initn: 2815 init1: 2815 opt: 2815 Z-score: 3048.3 bits: 573.0 E(85289): 4.7e-163
Smith-Waterman score: 2815; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
370 380 390 400 410
>>NP_004957 (OMIM: 601037) heterogeneous nuclear ribonuc (415 aa)
initn: 2815 init1: 2815 opt: 2815 Z-score: 3048.3 bits: 573.0 E(85289): 4.7e-163
Smith-Waterman score: 2815; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
370 380 390 400 410
>>XP_016864908 (OMIM: 601035) PREDICTED: heterogeneous n (429 aa)
initn: 2522 init1: 2130 opt: 2245 Z-score: 2432.2 bits: 459.1 E(85289): 9.8e-129
Smith-Waterman score: 2245; 77.3% identity (92.0% similar) in 415 aa overlap (1-415:1-414)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
:::: :::::::::.::::::::...:: :.::: :..:: :..:::::::: :::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
: :::.::.:::::::.:::::.:::::. .::::::::.:::: :.:::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::.::::::::::::::::::::::: .:. ::::::::::::.::::: ::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::.::::. :::.. ::: :.:..::::::::::..: : .: . ::.:::: :::. ::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
:::..:.: .::::: .: :::::.::.::: ::::::. : :::::::::::::::.:
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
:::::::::::::::::::::::::::::::::::::::.::::::::.:::::::.:::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
::::.:::.:::.::.. :::.: :..:.: ::..:: ::.::.::.::.:::
XP_016 LNSTAGASGGAYGSQMLGGMGLSN-QSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQE
370 380 390 400 410
XP_016 NSSDFQSNIA
420
>>XP_006714926 (OMIM: 601035) PREDICTED: heterogeneous n (429 aa)
initn: 2522 init1: 2130 opt: 2245 Z-score: 2432.2 bits: 459.1 E(85289): 9.8e-129
Smith-Waterman score: 2245; 77.3% identity (92.0% similar) in 415 aa overlap (1-415:1-414)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
:::: :::::::::.::::::::...:: :.::: :..:: :..:::::::: :::::::
XP_006 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
: :::.::.:::::::.:::::.:::::. .::::::::.:::: :.:::::::::::::
XP_006 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::.::::::::::::::::::::::: .:. ::::::::::::.::::: ::::::::::
XP_006 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::.::::. :::.. ::: :.:..::::::::::..: : .: . ::.:::: :::. ::
XP_006 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
:::..:.: .::::: .: :::::.::.::: ::::::. : :::::::::::::::.:
XP_006 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
:::::::::::::::::::::::::::::::::::::::.::::::::.:::::::.:::
XP_006 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
::::.:::.:::.::.. :::.: :..:.: ::..:: ::.::.::.::.:::
XP_006 LNSTAGASGGAYGSQMLGGMGLSN-QSSYGGPASQQLSGGYGGGYGGQSSMSGYDQVLQE
370 380 390 400 410
XP_006 NSSDFQSNIA
420
>>XP_016864903 (OMIM: 601035) PREDICTED: heterogeneous n (452 aa)
initn: 2463 init1: 2130 opt: 2237 Z-score: 2423.2 bits: 457.5 E(85289): 3.1e-128
Smith-Waterman score: 2237; 77.3% identity (92.0% similar) in 414 aa overlap (1-414:1-413)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
:::: :::::::::.::::::::...:: :.::: :..:: :..:::::::: :::::::
XP_016 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
: :::.::.:::::::.:::::.:::::. .::::::::.:::: :.:::::::::::::
XP_016 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::.::::::::::::::::::::::: .:. ::::::::::::.::::: ::::::::::
XP_016 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::.::::. :::.. ::: :.:..::::::::::..: : .: . ::.:::: :::. ::
XP_016 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
:::..:.: .::::: .: :::::.::.::: ::::::. : :::::::::::::::.:
XP_016 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
:::::::::::::::::::::::::::::::::::::::.::::::::.:::::::.:::
XP_016 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
::::.:::.:::.::.. :::.: :..:.: ::..:: ::.::.::.::.::
XP_016 LNSTAGASGGAYGSQMLGGMGLSN-QSSYGGPASQQLSGGYGGGYGGQSSMSGYGNQGAV
370 380 390 400 410
XP_016 NSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
420 430 440 450
>>XP_006714925 (OMIM: 601035) PREDICTED: heterogeneous n (452 aa)
initn: 2463 init1: 2130 opt: 2237 Z-score: 2423.2 bits: 457.5 E(85289): 3.1e-128
Smith-Waterman score: 2237; 77.3% identity (92.0% similar) in 414 aa overlap (1-414:1-413)
10 20 30 40 50 60
pF1KB4 MMLGPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVE
:::: :::::::::.::::::::...:: :.::: :..:: :..:::::::: :::::::
XP_006 MMLGTEGGEGFVVKVRGLPWSCSADEVQRFFSDCKIQNGAQGIRFIYTREGRPSGEAFVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 LGSEDDVKMALKKDRESMGHRYIEVFKSHRTEMDWVLKHSGPNSADSANDGFVRLRGLPF
: :::.::.:::::::.:::::.:::::. .::::::::.:::: :.:::::::::::::
XP_006 LESEDEVKLALKKDRETMGHRYVEVFKSNNVEMDWVLKHTGPNSPDTANDGFVRLRGLPF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRY
::.::::::::::::::::::::::: .:. ::::::::::::.::::: ::::::::::
XP_006 GCSKEEIVQFFSGLEIVPNGITLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 IEVFKSSQEEVRSYSDPPLKFMSVQRPGPYDRPGTARRYIGIVKQAGLERMRPGAYSTGY
::.::::. :::.. ::: :.:..::::::::::..: : .: . ::.:::: :::. ::
XP_006 IEIFKSSRAEVRTHYDPPRKLMAMQRPGPYDRPGAGRGYNSIGRGAGFERMRRGAYGGGY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 GGYEEYSGLSDGYGFTTDLFGRDLSYCLSGMYDHRYGDSEFTVQSTTGHCVHMRGLPYKA
:::..:.: .::::: .: :::::.::.::: ::::::. : :::::::::::::::.:
XP_006 GGYDDYNGYNDGYGFGSDRFGRDLNYCFSGMSDHRYGDGGSTFQSTTGHCVHMRGLPYRA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF
:::::::::::::::::::::::::::::::::::::::.::::::::.:::::::.:::
XP_006 TENDIYNFFSPLNPVRVHIEIGPDGRVTGEADVEFATHEDAVAAMSKDKANMQHRYVELF
310 320 330 340 350 360
370 380 390 400 410
pF1KB4 LNSTTGASNGAYSSQVMQGMGVSAAQATYSGLESQSVSGCYGAGYSGQNSMGGYD
::::.:::.:::.::.. :::.: :..:.: ::..:: ::.::.::.::.::
XP_006 LNSTAGASGGAYGSQMLGGMGLSN-QSSYGGPASQQLSGGYGGGYGGQSSMSGYGNQGAV
370 380 390 400 410
XP_006 NSSYYSSGSRASMGVNGMGGLSSMSSMSGGWGM
420 430 440 450
415 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:23:00 2016 done: Thu Nov 3 14:23:01 2016
Total Scan time: 6.570 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]