Result of FASTA (ccds) for
pF1KB4095
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4095, 1083 aa
1>>>pF1KB4095 1083 - 1083 aa - 1083 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 13.1070+/-0.0013; mu= -10.6068+/- 0.079
mean_var=545.7580+/-109.598, 0's: 0 Z-trim(114.1): 12 B-trim: 0 in 0/53
Lambda= 0.054900
statistics sampled from 14693 (14698) to 14693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.738), E-opt: 0.2 (0.451), width: 16
Scan time: 4.810
The best scores are: opt bits E(32554)
CCDS46072.1 SUPT5H gene_id:6829|Hs108|chr19 (1083) 7296 593.6 7.8e-169
CCDS12536.1 SUPT5H gene_id:6829|Hs108|chr19 (1087) 7278 592.2 2.1e-168
>>CCDS46072.1 SUPT5H gene_id:6829|Hs108|chr19 (1083 aa)
initn: 7296 init1: 7296 opt: 7296 Z-score: 3144.6 bits: 593.6 E(32554): 7.8e-169
Smith-Waterman score: 7296; 100.0% identity (100.0% similar) in 1083 aa overlap (1-1083:1-1083)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 LKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 QTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 GPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 MSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB4 PMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB4 TPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB4 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB4 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB4 ISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL
1030 1040 1050 1060 1070 1080
pF1KB4 LEA
:::
CCDS46 LEA
>>CCDS12536.1 SUPT5H gene_id:6829|Hs108|chr19 (1087 aa)
initn: 6701 init1: 6701 opt: 7278 Z-score: 3136.9 bits: 592.2 E(32554): 2.1e-168
Smith-Waterman score: 7278; 99.6% identity (99.6% similar) in 1087 aa overlap (1-1083:1-1087)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEK----ASNIDNVVLDEDRS
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
CCDS12 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
1030 1040 1050 1060 1070 1080
1080
pF1KB4 LGKLLEA
:::::::
CCDS12 LGKLLEA
1083 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:51:08 2016 done: Fri Nov 4 02:51:09 2016
Total Scan time: 4.810 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]