Result of FASTA (omim) for
pF1KB4095
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4095, 1083 aa
1>>>pF1KB4095 1083 - 1083 aa - 1083 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 16.1231+/-0.000528; mu= -28.9803+/- 0.033
mean_var=630.5502+/-128.853, 0's: 0 Z-trim(122.4): 9 B-trim: 1812 in 1/59
Lambda= 0.051076
statistics sampled from 40518 (40527) to 40518 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.746), E-opt: 0.2 (0.475), width: 16
Scan time: 17.870
The best scores are: opt bits E(85289)
NP_001124297 (OMIM: 602102) transcription elongati (1083) 7296 553.5 2.4e-156
NP_001306920 (OMIM: 602102) transcription elongati (1083) 7296 553.5 2.4e-156
NP_001124296 (OMIM: 602102) transcription elongati (1087) 7278 552.2 6e-156
NP_001104490 (OMIM: 602102) transcription elongati (1087) 7278 552.2 6e-156
NP_001306919 (OMIM: 602102) transcription elongati (1087) 7278 552.2 6e-156
NP_003160 (OMIM: 602102) transcription elongation (1087) 7278 552.2 6e-156
XP_016882663 (OMIM: 602102) PREDICTED: transcripti ( 637) 4352 336.5 3.1e-91
>>NP_001124297 (OMIM: 602102) transcription elongation f (1083 aa)
initn: 7296 init1: 7296 opt: 7296 Z-score: 2928.0 bits: 553.5 E(85289): 2.4e-156
Smith-Waterman score: 7296; 100.0% identity (100.0% similar) in 1083 aa overlap (1-1083:1-1083)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 LKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 QTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 GPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 MSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB4 PMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB4 TPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB4 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB4 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB4 ISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL
1030 1040 1050 1060 1070 1080
pF1KB4 LEA
:::
NP_001 LEA
>>NP_001306920 (OMIM: 602102) transcription elongation f (1083 aa)
initn: 7296 init1: 7296 opt: 7296 Z-score: 2928.0 bits: 553.5 E(85289): 2.4e-156
Smith-Waterman score: 7296; 100.0% identity (100.0% similar) in 1083 aa overlap (1-1083:1-1083)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKASNIDNVVLDEDRSGARR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLWTVKC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQNTIS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 LKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLIFEGN
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNFQPGD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKVIAGR
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELVQLDP
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 QTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIVKVID
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 GPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVGGFAP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 MSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGYIGVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB4 PMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEP
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB4 TPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB4 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGGYN
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB4 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEKVVS
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB4 ISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFLGKL
1030 1040 1050 1060 1070 1080
pF1KB4 LEA
:::
NP_001 LEA
>>NP_001124296 (OMIM: 602102) transcription elongation f (1087 aa)
initn: 6701 init1: 6701 opt: 7278 Z-score: 2920.8 bits: 552.2 E(85289): 6e-156
Smith-Waterman score: 7278; 99.6% identity (99.6% similar) in 1087 aa overlap (1-1083:1-1087)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEK----ASNIDNVVLDEDRS
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
1030 1040 1050 1060 1070 1080
1080
pF1KB4 LGKLLEA
:::::::
NP_001 LGKLLEA
>>NP_001104490 (OMIM: 602102) transcription elongation f (1087 aa)
initn: 6701 init1: 6701 opt: 7278 Z-score: 2920.8 bits: 552.2 E(85289): 6e-156
Smith-Waterman score: 7278; 99.6% identity (99.6% similar) in 1087 aa overlap (1-1083:1-1087)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEK----ASNIDNVVLDEDRS
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
1030 1040 1050 1060 1070 1080
1080
pF1KB4 LGKLLEA
:::::::
NP_001 LGKLLEA
>>NP_001306919 (OMIM: 602102) transcription elongation f (1087 aa)
initn: 6701 init1: 6701 opt: 7278 Z-score: 2920.8 bits: 552.2 E(85289): 6e-156
Smith-Waterman score: 7278; 99.6% identity (99.6% similar) in 1087 aa overlap (1-1083:1-1087)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEK----ASNIDNVVLDEDRS
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
1030 1040 1050 1060 1070 1080
1080
pF1KB4 LGKLLEA
:::::::
NP_001 LGKLLEA
>>NP_003160 (OMIM: 602102) transcription elongation fact (1087 aa)
initn: 6701 init1: 6701 opt: 7278 Z-score: 2920.8 bits: 552.2 E(85289): 6e-156
Smith-Waterman score: 7278; 99.6% identity (99.6% similar) in 1087 aa overlap (1-1083:1-1087)
10 20 30 40 50 60
pF1KB4 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSDSEDSNFSEEEDSERSSDGEEAEVDEERRSAAGSEKEEEPEDEEEEEEEEEYDEEEEE
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEK----ASNIDNVVLDEDRS
:::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_003 EDDDRPPKKPRHGGFILDEADVDDEYEDEDQWEDGAEDILEKEEIEASNIDNVVLDEDRS
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GARRLQNLWRDQREEELGEYYMKKYAKSSVGETVYGGSDELSDDITQQQLLPGVKDPNLW
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVEAYKQTHVKQAIE
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB4 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GVGNLRLGYWNQQMVPIKEMTDVLKVVKEVANLKPKSWVRLKRGIYKDDIAQVDYVEPSQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB4 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 NTISLKMIPRIDYDRIKARMSLKDWFAKRKKFKRPPQRLFDAEKIRSLGGDVASDGDFLI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB4 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 FEGNRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTESTGKEREHNF
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB4 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
430 440 450 460 470 480
480 490 500 510 520 530
pF1KB4 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
490 500 510 520 530 540
540 550 560 570 580 590
pF1KB4 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
550 560 570 580 590 600
600 610 620 630 640 650
pF1KB4 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
610 620 630 640 650 660
660 670 680 690 700 710
pF1KB4 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
670 680 690 700 710 720
720 730 740 750 760 770
pF1KB4 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
730 740 750 760 770 780
780 790 800 810 820 830
pF1KB4 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
790 800 810 820 830 840
840 850 860 870 880 890
pF1KB4 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
850 860 870 880 890 900
900 910 920 930 940 950
pF1KB4 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
910 920 930 940 950 960
960 970 980 990 1000 1010
pF1KB4 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
970 980 990 1000 1010 1020
1020 1030 1040 1050 1060 1070
pF1KB4 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
1030 1040 1050 1060 1070 1080
1080
pF1KB4 LGKLLEA
:::::::
NP_003 LGKLLEA
>>XP_016882663 (OMIM: 602102) PREDICTED: transcription e (637 aa)
initn: 4352 init1: 4352 opt: 4352 Z-score: 1759.0 bits: 336.5 E(85289): 3.1e-91
Smith-Waterman score: 4352; 100.0% identity (100.0% similar) in 637 aa overlap (447-1083:1-637)
420 430 440 450 460 470
pF1KB4 QPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKYFKMGDHVKV
::::::::::::::::::::::::::::::
XP_016 MPKHEDLKDMLEFPAQELRKYFKMGDHVKV
10 20 30
480 490 500 510 520 530
pF1KB4 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAGRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDVGGQHEWGELV
40 50 60 70 80 90
540 550 560 570 580 590
pF1KB4 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLDPQTVGVIVRLERETFQVLNMYGKVVTVRHQAVTRKKDNRFAVALDSEQNNIHVKDIV
100 110 120 130 140 150
600 610 620 630 640 650
pF1KB4 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVIDGPHSGREGEIRHLFRSFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTVG
160 170 180 190 200 210
660 670 680 690 700 710
pF1KB4 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKGY
220 230 240 250 260 270
720 730 740 750 760 770
pF1KB4 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGS
280 290 300 310 320 330
780 790 800 810 820 830
pF1KB4 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAF
340 350 360 370 380 390
840 850 860 870 880 890
pF1KB4 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQG
400 410 420 430 440 450
900 910 920 930 940 950
pF1KB4 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSP
460 470 480 490 500 510
960 970 980 990 1000 1010
pF1KB4 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GGYNPHTPGSGIEQNSSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSE
520 530 540 550 560 570
1020 1030 1040 1050 1060 1070
pF1KB4 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRF
580 590 600 610 620 630
1080
pF1KB4 LGKLLEA
:::::::
XP_016 LGKLLEA
1083 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:51:09 2016 done: Fri Nov 4 02:51:12 2016
Total Scan time: 17.870 Total Display time: 0.380
Function used was FASTA [36.3.4 Apr, 2011]