Result of FASTA (ccds) for
pF1KB4099
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4099, 452 aa
1>>>pF1KB4099 452 - 452 aa - 452 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5016+/-0.000844; mu= 16.4381+/- 0.051
mean_var=65.7056+/-12.901, 0's: 0 Z-trim(106.2): 75 B-trim: 0 in 0/52
Lambda= 0.158224
statistics sampled from 8775 (8855) to 8775 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.272), width: 16
Scan time: 2.750
The best scores are: opt bits E(32554)
CCDS14160.1 GLRA2 gene_id:2742|Hs108|chrX ( 452) 3035 701.7 3.8e-202
CCDS48085.1 GLRA2 gene_id:2742|Hs108|chrX ( 452) 3029 700.3 9.9e-202
CCDS55371.1 GLRA2 gene_id:2742|Hs108|chrX ( 363) 2437 565.2 3.9e-161
CCDS43283.1 GLRA3 gene_id:8001|Hs108|chr4 ( 449) 2408 558.6 4.6e-159
CCDS4320.1 GLRA1 gene_id:2741|Hs108|chr5 ( 449) 2331 541.0 9.1e-154
CCDS43980.2 GLRA4 gene_id:441509|Hs108|chrX ( 417) 2192 509.3 3e-144
CCDS54942.1 GLRA1 gene_id:2741|Hs108|chr5 ( 457) 2087 485.3 5.4e-137
CCDS3822.1 GLRA3 gene_id:8001|Hs108|chr4 ( 464) 2024 470.9 1.2e-132
CCDS3796.1 GLRB gene_id:2743|Hs108|chr4 ( 497) 1220 287.4 2.2e-77
CCDS54813.1 GLRB gene_id:2743|Hs108|chr4 ( 303) 1023 242.4 4.9e-64
CCDS3471.1 GABRA2 gene_id:2555|Hs108|chr4 ( 451) 973 231.0 1.9e-60
CCDS10018.1 GABRB3 gene_id:2562|Hs108|chr15 ( 473) 966 229.4 6e-60
CCDS3474.1 GABRB1 gene_id:2560|Hs108|chr4 ( 474) 963 228.8 9.6e-60
CCDS4357.1 GABRA1 gene_id:2554|Hs108|chr5 ( 456) 961 228.3 1.3e-59
CCDS10019.1 GABRB3 gene_id:2562|Hs108|chr15 ( 473) 959 227.8 1.8e-59
CCDS45194.1 GABRA5 gene_id:2558|Hs108|chr15 ( 462) 953 226.5 4.6e-59
CCDS4354.1 GABRB2 gene_id:2561|Hs108|chr5 ( 474) 947 225.1 1.2e-58
CCDS4355.1 GABRB2 gene_id:2561|Hs108|chr5 ( 512) 947 225.1 1.3e-58
CCDS36.1 GABRD gene_id:2563|Hs108|chr1 ( 452) 926 220.3 3.2e-57
CCDS4375.1 GABRP gene_id:2568|Hs108|chr5 ( 440) 922 219.4 5.9e-57
CCDS3473.1 GABRA4 gene_id:2557|Hs108|chr4 ( 554) 907 216.0 7.7e-56
CCDS59029.1 GABRR1 gene_id:2569|Hs108|chr6 ( 462) 906 215.7 7.7e-56
CCDS5019.2 GABRR1 gene_id:2569|Hs108|chr6 ( 479) 906 215.7 8e-56
CCDS14707.1 GABRQ gene_id:55879|Hs108|chrX ( 632) 901 214.7 2.2e-55
CCDS5020.3 GABRR2 gene_id:2570|Hs108|chr6 ( 465) 898 213.9 2.8e-55
CCDS4358.1 GABRG2 gene_id:2566|Hs108|chr5 ( 467) 897 213.7 3.2e-55
CCDS3470.1 GABRG1 gene_id:2565|Hs108|chr4 ( 465) 895 213.2 4.4e-55
CCDS4356.1 GABRA6 gene_id:2559|Hs108|chr5 ( 453) 894 213.0 5.1e-55
CCDS59028.1 GABRR1 gene_id:2569|Hs108|chr6 ( 392) 879 209.5 4.8e-54
CCDS82921.1 GABRA2 gene_id:2555|Hs108|chr4 ( 511) 874 208.5 1.3e-53
CCDS14706.1 GABRA3 gene_id:2556|Hs108|chrX ( 492) 856 204.3 2.2e-52
CCDS45195.1 GABRG3 gene_id:2567|Hs108|chr15 ( 467) 851 203.2 4.7e-52
CCDS4359.1 GABRG2 gene_id:2566|Hs108|chr5 ( 475) 846 202.0 1.1e-51
CCDS54617.1 GABRR3 gene_id:200959|Hs108|chr3 ( 467) 833 199.1 8.1e-51
CCDS53921.1 GABRB3 gene_id:2562|Hs108|chr15 ( 402) 831 198.6 9.8e-51
CCDS53920.1 GABRB3 gene_id:2562|Hs108|chr15 ( 388) 811 194.0 2.2e-49
CCDS14703.1 GABRE gene_id:2564|Hs108|chrX ( 506) 796 190.6 3e-48
CCDS75368.1 GABRP gene_id:2568|Hs108|chr5 ( 289) 686 165.4 6.7e-41
CCDS47333.1 GABRG2 gene_id:2566|Hs108|chr5 ( 515) 451 111.9 1.6e-24
CCDS59251.1 GABRG3 gene_id:2567|Hs108|chr15 ( 253) 440 109.3 4.8e-24
CCDS6135.1 CHRNA6 gene_id:8973|Hs108|chr8 ( 494) 313 80.4 4.6e-15
CCDS3459.1 CHRNA9 gene_id:55584|Hs108|chr4 ( 479) 302 77.9 2.6e-14
CCDS53710.1 HTR3A gene_id:3359|Hs108|chr11 ( 463) 294 76.0 8.8e-14
CCDS8365.2 HTR3A gene_id:3359|Hs108|chr11 ( 484) 294 76.0 9.1e-14
CCDS2261.1 CHRNA1 gene_id:1134|Hs108|chr2 ( 457) 290 75.1 1.6e-13
CCDS8366.2 HTR3A gene_id:3359|Hs108|chr11 ( 516) 270 70.6 4.3e-12
CCDS53964.1 CHRNA3 gene_id:1136|Hs108|chr15 ( 489) 268 70.1 5.6e-12
CCDS10305.1 CHRNA3 gene_id:1136|Hs108|chr15 ( 505) 268 70.1 5.8e-12
CCDS10306.1 CHRNB4 gene_id:1143|Hs108|chr15 ( 498) 267 69.9 6.7e-12
CCDS56536.1 CHRNA6 gene_id:8973|Hs108|chr8 ( 479) 263 69.0 1.2e-11
>>CCDS14160.1 GLRA2 gene_id:2742|Hs108|chrX (452 aa)
initn: 3035 init1: 3035 opt: 3035 Z-score: 3742.6 bits: 701.7 E(32554): 3.8e-202
Smith-Waterman score: 3035; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
370 380 390 400 410 420
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::::::::::::::::::::::::::::::::
CCDS14 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
430 440 450
>>CCDS48085.1 GLRA2 gene_id:2742|Hs108|chrX (452 aa)
initn: 3029 init1: 3029 opt: 3029 Z-score: 3735.2 bits: 700.3 E(32554): 9.9e-202
Smith-Waterman score: 3029; 99.6% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::..::::::::::::::::::::::::::::::::::
CCDS48 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
370 380 390 400 410 420
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::::::::::::::::::::::::::::::::
CCDS48 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
430 440 450
>>CCDS55371.1 GLRA2 gene_id:2742|Hs108|chrX (363 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 3006.3 bits: 565.2 E(32554): 3.9e-161
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 363 aa overlap (90-452:1-363)
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::
CCDS55 MDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
10 20 30
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
280 290 300 310 320 330
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
CCDS55 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
340 350 360
>>CCDS43283.1 GLRA3 gene_id:8001|Hs108|chr4 (449 aa)
initn: 2383 init1: 2010 opt: 2408 Z-score: 2969.1 bits: 558.6 E(32554): 4.6e-159
Smith-Waterman score: 2408; 80.6% identity (91.9% similar) in 443 aa overlap (10-452:9-447)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
: . .:.. . .. ... :... : .::::::::::::::::::
CCDS43 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDA
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::..::::::::::::::.::: :::::::::::::::
CCDS43 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
:::::::::::::::::::::::.:::::::::: :::.:::::::::::::::::::::
CCDS43 PSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
:::::: ::::::::::::::::: ...:::::::::::::.:::::.: ::::::::::
CCDS43 MDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
:::::::::::::::::::::::::::::.:::::::::::::::::.::.:: ::.::
CCDS43 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR--KRKNK
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
...: :::::.:..:::: :::.::: . :. : .:. ::. : ..: :.::::.:::
CCDS43 DDEV-RESRFSFTAYGMGPCLQAKDGMTPKG-PNHPVQVMPKSPDEMRKVFIDRAKKIDT
360 370 380 390 400 410
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::: :::::::::::::. :::.::::.:..
CCDS43 ISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
420 430 440
>>CCDS4320.1 GLRA1 gene_id:2741|Hs108|chr5 (449 aa)
initn: 2230 init1: 1982 opt: 2331 Z-score: 2874.1 bits: 541.0 E(32554): 9.1e-154
Smith-Waterman score: 2331; 79.4% identity (91.5% similar) in 437 aa overlap (22-452:18-449)
10 20 30 40 50
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDS-RSGKQPSQTLSPSDFLDKLMGRTSGYD
: : :. .. ::. .: .:::::::::::::::::
CCDS43 MYSFNTLRLYLWETIVFFSLAASKEAEAARSAPKP---MSPSDFLDKLMGRTSGYD
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::.::::::::::..:::::::::::::::::: ::::.:::::::::
CCDS43 ARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
:::::::::::::::::::::.::..::::::::::.::.::::::.::::.::::::::
CCDS43 DPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::: ::::::::::::::::: .: ::::.:::::::::::::.: :::::::::
CCDS43 PMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQFILKEEKDLRYCTKHYNTG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::..::::::::::::::::::::::::::.:::::::::::::.:::::::::::
CCDS43 KFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::.:::::::::::::::::.::.:: ::..
CCDS43 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR--KRRH
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGH-CLQVKDGTAVK----ATPANPLPQPPKDGDAIKKKFVDR
..:: . :.:::::.:::: :::.::: .:: .. .:: : : :. . ..: :..:
CCDS43 HKEDEAGEGRFNFSAYGMGPACLQAKDGISVKGANNSNTTNPPPAPSKSPEEMRKLFIQR
360 370 380 390 400 410
420 430 440 450
pF1KB4 AKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::.:: ::: .::.::::::.:::: :::.:.::::..
CCDS43 AKKIDKISRIGFPMAFLIFNMFYWIIYKIVRREDVHNQ
420 430 440
>>CCDS43980.2 GLRA4 gene_id:441509|Hs108|chrX (417 aa)
initn: 2143 init1: 1080 opt: 2192 Z-score: 2703.1 bits: 509.3 E(32554): 3e-144
Smith-Waterman score: 2192; 81.6% identity (91.9% similar) in 397 aa overlap (22-413:23-417)
10 20 30 40 50
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
.:.:. :. . .:: . :: .:::::::::::::::::
CCDS43 MTTLVPATLSFLLLWTLPGQVLLRVALAKE-EVKSGTKGSQPMSPSDFLDKLMGRTSGYD
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
:::::::::::::::::::::::.:.:.::::::::.:::::::: ::.: :::::::::
CCDS43 ARIRPNFKGPPVNVTCNIFINSFSSITKTTMDYRVNVFLRQQWNDPRLSYREYPDDSLDL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::.:::::::::: :::.::::::::: ::: ::::::
CCDS43 DPSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCLMDLKNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGP-VQVAEGLTLPQFILKEEKELGYCTKHYNT
:::.::::::::::::::.::.:::: :.: ::::::::::::::..::.:: :::::::
CCDS43 PMDIQTCTMQLESFGYTMKDLVFEWLEDAPAVQVAEGLTLPQFILRDEKDLGCCTKHYNT
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 GKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMT
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
CCDS43 GKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 TQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQ
:::::::::::::::::::::::::::::::::::::::.::::::::::.::::::.::
CCDS43 TQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAINFVSRQHKEFIRLRRRQRRQ
300 310 320 330 340 350
360 370 380 390 400 410
pF1KB4 NKEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPP----KDGDAIKKKFVDR
:::. .:::: : :::.:::::..:: .... :::: ..:.. .: .::
CCDS43 RLEEDIIQESRFYFRGYGLGHCLQARDGGPMEGSGIYS-PQPPAPLLREGETTRKLYVD
360 370 380 390 400 410
420 430 440 450
pF1KB4 AKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
>>CCDS54942.1 GLRA1 gene_id:2741|Hs108|chr5 (457 aa)
initn: 2329 init1: 1955 opt: 2087 Z-score: 2573.0 bits: 485.3 E(32554): 5.4e-137
Smith-Waterman score: 2317; 77.9% identity (90.7% similar) in 443 aa overlap (22-452:18-457)
10 20 30 40 50
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDS-RSGKQPSQTLSPSDFLDKLMGRTSGYD
: : :. .. ::. .: .:::::::::::::::::
CCDS54 MYSFNTLRLYLWETIVFFSLAASKEAEAARSAPKP---MSPSDFLDKLMGRTSGYD
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::.::::::::::..:::::::::::::::::: ::::.:::::::::
CCDS54 ARIRPNFKGPPVNVSCNIFINSFGSIAETTMDYRVNIFLRQQWNDPRLAYNEYPDDSLDL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
:::::::::::::::::::::.::..::::::::::.::.::::::.::::.::::::::
CCDS54 DPSMLDSIWKPDLFFANEKGAHFHEITTDNKLLRISRNGNVLYSIRITLTLACPMDLKNF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::: ::::::::::::::::: .: ::::.:::::::::::::.: :::::::::
CCDS54 PMDVQTCIMQLESFGYTMNDLIFEWQEQGAVQVADGLTLPQFILKEEKDLRYCTKHYNTG
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::..::::::::::::::::::::::::::.:::::::::::::.:::::::::::
CCDS54 KFTCIEARFHLERQMGYYLIQMYIPSLLIVILSWISFWINMDAAPARVGLGITTVLTMTT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::.:::::::::::::::::.::.::......
CCDS54 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRRKRRHHK
300 310 320 330 340 350
360 370 380 390 400
pF1KB4 K------EEDVTRESRFNFSGYGMGH-CLQVKDGTAVK----ATPANPLPQPPKDGDAIK
. .:: . :.:::::.:::: :::.::: .:: .. .:: : : :. . ..
CCDS54 SPMLNLFQEDEAGEGRFNFSAYGMGPACLQAKDGISVKGANNSNTTNPPPAPSKSPEEMR
360 370 380 390 400 410
410 420 430 440 450
pF1KB4 KKFVDRAKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
: :..:::.:: ::: .::.::::::.:::: :::.:.::::..
CCDS54 KLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIYKIVRREDVHNQ
420 430 440 450
>>CCDS3822.1 GLRA3 gene_id:8001|Hs108|chr4 (464 aa)
initn: 2382 init1: 2009 opt: 2024 Z-score: 2495.1 bits: 470.9 E(32554): 1.2e-132
Smith-Waterman score: 2381; 78.3% identity (88.8% similar) in 457 aa overlap (10-452:9-462)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
: . .:.. . .. ... :... : .::::::::::::::::::
CCDS38 MAHVRHFRTLVSGFYFWEAALLLSLVATKETDSARSRSAPMSPSDFLDKLMGRTSGYDA
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::..::::::::::::::.::: :::::::::::::::
CCDS38 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQKWNDPRLAYSEYPDDSLDLD
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
:::::::::::::::::::::::.:::::::::: :::.:::::::::::::::::::::
CCDS38 PSMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLTLSCPMDLKNFP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
:::::: ::::::::::::::::: ...:::::::::::::.:::::.: ::::::::::
CCDS38 MDVQTCIMQLESFGYTMNDLIFEWQDEAPVQVAEGLTLPQFLLKEEKDLRYCTKHYNTGK
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 FTCIEVRFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
:::::::::::::::::::::::::::::.:::::::::::::::::.::.:: ::.::
CCDS38 SSGSRASLPKVSYVKAIDIWMAVCLLFVFSALLEYAAVNFVSRQHKELLRFRR--KRKNK
300 310 320 330 340 350
370 380 390 400
pF1KB4 EE--------------DVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDA
: : .:::::.:..:::: :::.::: . :. : .:. ::. :
CCDS38 TEAFALEKFYRFSDMDDEVRESRFSFTAYGMGPCLQAKDGMTPKG-PNHPVQVMPKSPDE
360 370 380 390 400 410
410 420 430 440 450
pF1KB4 IKKKFVDRAKRIDTISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
..: :.::::.::::::: :::::::::::::. :::.::::.:..
CCDS38 MRKVFIDRAKKIDTISRACFPLAFLIFNIFYWVIYKILRHEDIHQQQD
420 430 440 450 460
>>CCDS3796.1 GLRB gene_id:2743|Hs108|chr4 (497 aa)
initn: 1261 init1: 479 opt: 1220 Z-score: 1502.8 bits: 287.4 E(32554): 2.2e-77
Smith-Waterman score: 1262; 45.3% identity (66.5% similar) in 492 aa overlap (8-438:4-493)
10 20 30 40
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQ-------PSQTLS------PSDF
.::. : ..: . . :. :...:..:: ::: . :..
CCDS37 MKFLLTTAF-LILISLWVEEAYSKEKSSKKGKGKKKQYLCPSQQSAEDLARVPANS
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 LDKLMGRT-SGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSR
.....: .:: :::::::: ::.:. :::::::::. ::::::::::::::.::: :
CCDS37 TSNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPR
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 LAY-SEY-PDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSI
: :.. .:.: .::.: .:::::::::::.::::::: .: :: : ..: :: :.
CCDS37 LKLPSDFRGSDALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGDVLVSM
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 RLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQF-IL
::..:::::.:: ::::.: : ::::::::: .:: : : : :::. : ..:::: :
CCDS37 RLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQL-EKIALPQFDIK
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB4 KEEKELGYCTKHYN-TGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA
::. : : :::.:. :: .::.:: : :.::.:.:.. .: :.::::.:::.::::: ::
CCDS37 KEDIEYGNCTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB4 APARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFV-
. ::: ::: .::..... . : :::::::::.:.:. .:::: ::.:.:::.:. .
CCDS37 SAARVPLGIFSVLSLASECTTLAAELPKVSYVKALDVWLIACLLFGFASLVEYAVVQVML
300 310 320 330 340 350
350 360 370 380
pF1KB4 ---SRQHKEFLRLRRRQKRQNKEEDVTRESRFNFSG---------YGMGHCLQV------
.: . : :. . .. ..: .:.... : .: : .: .:
CCDS37 NNPKRVEAEKARIAKAEQADGKGGNVAKKNTVNGTGTPVHISTLQVGETRCKKVCTSKSD
360 370 380 390 400 410
390 400 410
pF1KB4 ---KDGTAVKATPAN-----------PLP----------QPPKDGDAIKKKFVDRAKRID
.: . : . : . :. . : : . :::::
CCDS37 LRSNDFSIVGSLPRDFELSNYDCYGKPIEVNNGLGKSQAKNNKKPPPAKPVIPTAAKRID
420 430 440 450 460 470
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
.:: ::. ::.::..::
CCDS37 LYARALFPFCFLFFNVIYWSIYL
480 490
>>CCDS54813.1 GLRB gene_id:2743|Hs108|chr4 (303 aa)
initn: 992 init1: 465 opt: 1023 Z-score: 1263.1 bits: 242.4 E(32554): 4.9e-64
Smith-Waterman score: 1027; 55.1% identity (75.1% similar) in 301 aa overlap (8-290:4-302)
10 20 30 40
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQ-------PSQTLS------PSDF
.::. : ..: . . :. :...:..:: ::: . :..
CCDS54 MKFLLTTAF-LILISLWVEEAYSKEKSSKKGKGKKKQYLCPSQQSAEDLARVPANS
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 LDKLMGRT-SGYDARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSR
.....: .:: :::::::: ::.:. :::::::::. ::::::::::::::.::: :
CCDS54 TSNILNRLLVSYDPRIRPNFKGIPVDVVVNIFINSFGSIQETTMDYRVNIFLRQKWNDPR
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 LAY-SEY-PDDSLDLDPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSI
: :.. .:.: .::.: .:::::::::::.::::::: .: :: : ..: :: :.
CCDS54 LKLPSDFRGSDALTVDPTMYKCLWKPDLFFANEKSANFHDVTQENILLFIFRDGDVLVSM
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 RLTLTLSCPMDLKNFPMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQF-IL
::..:::::.:: ::::.: : ::::::::: .:: : : : :::. : ..:::: :
CCDS54 RLSITLSCPLDLTLFPMDTQRCKMQLESFGYTTDDLRFIWQSGDPVQL-EKIALPQFDIK
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB4 KEEKELGYCTKHYN-TGKFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDA
::. : : :::.:. :: .::.:: : :.::.:.:.. .: :.::::.:::.::::: ::
CCDS54 KEDIEYGNCTKYYKGTGYYTCVEVIFTLRRQVGFYMMGVYAPTLLIVVLSWLSFWINPDA
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB4 APARVALGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVS
. ::: ::
CCDS54 SAARVPLGW
300
452 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:38:06 2016 done: Sat Nov 5 05:38:06 2016
Total Scan time: 2.750 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]