Result of FASTA (omim) for
pF1KB4099
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4099, 452 aa
1>>>pF1KB4099 452 - 452 aa - 452 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3968+/-0.000365; mu= 17.1104+/- 0.023
mean_var=67.1721+/-13.522, 0's: 0 Z-trim(113.3): 162 B-trim: 291 in 1/51
Lambda= 0.156488
statistics sampled from 22472 (22646) to 22472 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.266), width: 16
Scan time: 7.130
The best scores are: opt bits E(85289)
NP_001112357 (OMIM: 305990) glycine receptor subun ( 452) 3035 694.3 1.8e-199
NP_002054 (OMIM: 305990) glycine receptor subunit ( 452) 3035 694.3 1.8e-199
NP_001112358 (OMIM: 305990) glycine receptor subun ( 452) 3029 692.9 4.5e-199
XP_016884916 (OMIM: 305990) PREDICTED: glycine rec ( 452) 3029 692.9 4.5e-199
XP_011543798 (OMIM: 305990) PREDICTED: glycine rec ( 436) 2893 662.2 7.6e-190
XP_011543797 (OMIM: 305990) PREDICTED: glycine rec ( 436) 2893 662.2 7.6e-190
XP_006724550 (OMIM: 305990) PREDICTED: glycine rec ( 436) 2893 662.2 7.6e-190
XP_016884917 (OMIM: 305990) PREDICTED: glycine rec ( 363) 2437 559.2 6.4e-159
XP_016884918 (OMIM: 305990) PREDICTED: glycine rec ( 363) 2437 559.2 6.4e-159
NP_001165413 (OMIM: 305990) glycine receptor subun ( 363) 2437 559.2 6.4e-159
NP_001036008 (OMIM: 600421) glycine receptor subun ( 449) 2408 552.7 7.2e-157
NP_000162 (OMIM: 138491,149400) glycine receptor s ( 449) 2331 535.3 1.2e-151
XP_016864838 (OMIM: 138491,149400) PREDICTED: glyc ( 465) 2330 535.1 1.5e-151
NP_001139512 (OMIM: 138491,149400) glycine recepto ( 457) 2087 480.2 4.8e-135
NP_006520 (OMIM: 600421) glycine receptor subunit ( 464) 2024 466.0 9.2e-131
XP_016864119 (OMIM: 600421) PREDICTED: glycine rec ( 424) 2011 463.1 6.5e-130
NP_001278929 (OMIM: 138491,149400) glycine recepto ( 366) 2008 462.4 9.2e-130
XP_011530569 (OMIM: 600421) PREDICTED: glycine rec ( 313) 1731 399.8 5.4e-111
NP_000815 (OMIM: 138492,614619) glycine receptor s ( 497) 1220 284.5 4.3e-76
NP_001159532 (OMIM: 138492,614619) glycine recepto ( 497) 1220 284.5 4.3e-76
XP_016863523 (OMIM: 138492,614619) PREDICTED: glyc ( 399) 1040 243.8 6.1e-64
NP_001159533 (OMIM: 138492,614619) glycine recepto ( 303) 1023 239.9 6.9e-63
XP_016863524 (OMIM: 138492,614619) PREDICTED: glyc ( 303) 1023 239.9 6.9e-63
XP_011530570 (OMIM: 600421) PREDICTED: glycine rec ( 269) 1003 235.4 1.4e-61
XP_016863471 (OMIM: 103780,137140) PREDICTED: gamm ( 451) 973 228.7 2.4e-59
XP_016863472 (OMIM: 103780,137140) PREDICTED: gamm ( 451) 973 228.7 2.4e-59
NP_001107647 (OMIM: 103780,137140) gamma-aminobuty ( 451) 973 228.7 2.4e-59
NP_000798 (OMIM: 103780,137140) gamma-aminobutyric ( 451) 973 228.7 2.4e-59
NP_068712 (OMIM: 137192,612269,617113) gamma-amino ( 473) 966 227.2 7.5e-59
NP_000803 (OMIM: 137190,617153) gamma-aminobutyric ( 474) 963 226.5 1.2e-58
NP_001121116 (OMIM: 137160,611136,615744) gamma-am ( 456) 961 226.0 1.6e-58
NP_001121117 (OMIM: 137160,611136,615744) gamma-am ( 456) 961 226.0 1.6e-58
NP_001121120 (OMIM: 137160,611136,615744) gamma-am ( 456) 961 226.0 1.6e-58
NP_001121115 (OMIM: 137160,611136,615744) gamma-am ( 456) 961 226.0 1.6e-58
NP_000797 (OMIM: 137160,611136,615744) gamma-amino ( 456) 961 226.0 1.6e-58
NP_000805 (OMIM: 137192,612269,617113) gamma-amino ( 473) 959 225.6 2.2e-58
NP_001158509 (OMIM: 137142) gamma-aminobutyric aci ( 462) 953 224.2 5.6e-58
XP_006720522 (OMIM: 137142) PREDICTED: gamma-amino ( 462) 953 224.2 5.6e-58
XP_005268315 (OMIM: 137142) PREDICTED: gamma-amino ( 462) 953 224.2 5.6e-58
NP_000801 (OMIM: 137142) gamma-aminobutyric acid r ( 462) 953 224.2 5.6e-58
NP_000804 (OMIM: 600232) gamma-aminobutyric acid r ( 474) 947 222.9 1.5e-57
NP_068711 (OMIM: 600232) gamma-aminobutyric acid r ( 512) 947 222.9 1.6e-57
NP_000806 (OMIM: 137163,613060) gamma-aminobutyric ( 452) 926 218.1 3.8e-56
XP_011539496 (OMIM: 137163,613060) PREDICTED: gamm ( 465) 926 218.1 3.9e-56
XP_016856425 (OMIM: 137163,613060) PREDICTED: gamm ( 687) 926 218.2 5.4e-56
NP_055026 (OMIM: 602729) gamma-aminobutyric acid r ( 440) 922 217.2 6.9e-56
NP_000800 (OMIM: 137141) gamma-aminobutyric acid r ( 554) 907 213.9 8.8e-55
NP_001243632 (OMIM: 137161) gamma-aminobutyric aci ( 462) 906 213.6 8.8e-55
NP_002033 (OMIM: 137161) gamma-aminobutyric acid r ( 479) 906 213.6 9.1e-55
NP_001191195 (OMIM: 137141) gamma-aminobutyric aci ( 535) 904 213.2 1.4e-54
>>NP_001112357 (OMIM: 305990) glycine receptor subunit a (452 aa)
initn: 3035 init1: 3035 opt: 3035 Z-score: 3702.3 bits: 694.3 E(85289): 1.8e-199
Smith-Waterman score: 3035; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
370 380 390 400 410 420
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::::::::::::::::::::::::::::::::
NP_001 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
430 440 450
>>NP_002054 (OMIM: 305990) glycine receptor subunit alph (452 aa)
initn: 3035 init1: 3035 opt: 3035 Z-score: 3702.3 bits: 694.3 E(85289): 1.8e-199
Smith-Waterman score: 3035; 100.0% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
370 380 390 400 410 420
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::::::::::::::::::::::::::::::::
NP_002 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
430 440 450
>>NP_001112358 (OMIM: 305990) glycine receptor subunit a (452 aa)
initn: 3029 init1: 3029 opt: 3029 Z-score: 3695.0 bits: 692.9 E(85289): 4.5e-199
Smith-Waterman score: 3029; 99.6% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::..::::::::::::::::::::::::::::::::::
NP_001 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
370 380 390 400 410 420
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::::::::::::::::::::::::::::::::
NP_001 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
430 440 450
>>XP_016884916 (OMIM: 305990) PREDICTED: glycine recepto (452 aa)
initn: 3029 init1: 3029 opt: 3029 Z-score: 3695.0 bits: 692.9 E(85289): 4.5e-199
Smith-Waterman score: 3029; 99.6% identity (100.0% similar) in 452 aa overlap (1-452:1-452)
10 20 30 40 50 60
pF1KB4 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MNRQLVNILTALFAFFLETNHFRTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYDA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
::::::::::::::::::::::::..::::::::::::::::::::::::::::::::::
XP_016 RIRPNFKGPPVNVTCNIFINSFGSIAETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDLD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNFP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTGK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTTQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQNK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRIDT
370 380 390 400 410 420
430 440 450
pF1KB4 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
::::::::::::::::::::::::::::::::
XP_016 ISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
430 440 450
>>XP_011543798 (OMIM: 305990) PREDICTED: glycine recepto (436 aa)
initn: 2888 init1: 2888 opt: 2893 Z-score: 3529.3 bits: 662.2 E(85289): 7.6e-190
Smith-Waterman score: 2893; 99.5% identity (99.8% similar) in 433 aa overlap (21-452:4-436)
10 20 30 40 50
pF1KB4 MNRQLVNILTALFAFFLETNHFR-TAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
:.: ::::::::::::::::::::::::::::::::::::
XP_011 MNLHMRMTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
10 20 30 40
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
350 360 370 380 390 400
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
XP_011 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
410 420 430
>>XP_011543797 (OMIM: 305990) PREDICTED: glycine recepto (436 aa)
initn: 2888 init1: 2888 opt: 2893 Z-score: 3529.3 bits: 662.2 E(85289): 7.6e-190
Smith-Waterman score: 2893; 99.5% identity (99.8% similar) in 433 aa overlap (21-452:4-436)
10 20 30 40 50
pF1KB4 MNRQLVNILTALFAFFLETNHFR-TAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
:.: ::::::::::::::::::::::::::::::::::::
XP_011 MNLHMRMTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
10 20 30 40
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
350 360 370 380 390 400
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
XP_011 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
410 420 430
>>XP_006724550 (OMIM: 305990) PREDICTED: glycine recepto (436 aa)
initn: 2888 init1: 2888 opt: 2893 Z-score: 3529.3 bits: 662.2 E(85289): 7.6e-190
Smith-Waterman score: 2893; 99.5% identity (99.8% similar) in 433 aa overlap (21-452:4-436)
10 20 30 40 50
pF1KB4 MNRQLVNILTALFAFFLETNHFR-TAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
:.: ::::::::::::::::::::::::::::::::::::
XP_006 MNLHMRMTAFCKDHDSRSGKQPSQTLSPSDFLDKLMGRTSGYD
10 20 30 40
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
350 360 370 380 390 400
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
XP_006 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
410 420 430
>>XP_016884917 (OMIM: 305990) PREDICTED: glycine recepto (363 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 2974.1 bits: 559.2 E(85289): 6.4e-159
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 363 aa overlap (90-452:1-363)
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::
XP_016 MDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
10 20 30
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
280 290 300 310 320 330
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
XP_016 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
340 350 360
>>XP_016884918 (OMIM: 305990) PREDICTED: glycine recepto (363 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 2974.1 bits: 559.2 E(85289): 6.4e-159
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 363 aa overlap (90-452:1-363)
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::
XP_016 MDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
10 20 30
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
280 290 300 310 320 330
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
XP_016 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
340 350 360
>>NP_001165413 (OMIM: 305990) glycine receptor subunit a (363 aa)
initn: 2437 init1: 2437 opt: 2437 Z-score: 2974.1 bits: 559.2 E(85289): 6.4e-159
Smith-Waterman score: 2437; 100.0% identity (100.0% similar) in 363 aa overlap (90-452:1-363)
60 70 80 90 100 110
pF1KB4 ARIRPNFKGPPVNVTCNIFINSFGSVTETTMDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
::::::::::::::::::::::::::::::
NP_001 MDYRVNIFLRQQWNDSRLAYSEYPDDSLDL
10 20 30
120 130 140 150 160 170
pF1KB4 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPSMLDSIWKPDLFFANEKGANFHDVTTDNKLLRISKNGKVLYSIRLTLTLSCPMDLKNF
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB4 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PMDVQTCTMQLESFGYTMNDLIFEWLSDGPVQVAEGLTLPQFILKEEKELGYCTKHYNTG
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB4 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KFTCIEVKFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVALGITTVLTMTT
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB4 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QSSGSRASLPKVSYVKAIDIWMAVCLLFVFAALLEYAAVNFVSRQHKEFLRLRRRQKRQN
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB4 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEEDVTRESRFNFSGYGMGHCLQVKDGTAVKATPANPLPQPPKDGDAIKKKFVDRAKRID
280 290 300 310 320 330
420 430 440 450
pF1KB4 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
:::::::::::::::::::::::::::::::::
NP_001 TISRAAFPLAFLIFNIFYWITYKIIRHEDVHKK
340 350 360
452 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:38:07 2016 done: Sat Nov 5 05:38:08 2016
Total Scan time: 7.130 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]