FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4102, 715 aa
  1>>>pF1KB4102 715 - 715 aa - 715 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.1635+/-0.00102; mu= -5.7908+/- 0.061
 mean_var=293.6840+/-60.943, 0's: 0 Z-trim(113.7): 6  B-trim: 0 in 0/53
 Lambda= 0.074840
 statistics sampled from 14337 (14340) to 14337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.44), width:  16
 Scan time:  4.060

The best scores are:                                      opt bits E(32554)
CCDS46827.1 NCKIPSD gene_id:51517|Hs108|chr3       ( 715) 4706 521.8 1.4e-147
CCDS2776.1 NCKIPSD gene_id:51517|Hs108|chr3        ( 722) 4682 519.2 8.5e-147


>>CCDS46827.1 NCKIPSD gene_id:51517|Hs108|chr3            (715 aa)
 initn: 4706 init1: 4706 opt: 4706  Z-score: 2763.0  bits: 521.8 E(32554): 1.4e-147
Smith-Waterman score: 4706; 100.0% identity (100.0% similar) in 715 aa overlap (1-715:1-715)

               10        20        30        40        50        60
pF1KB4 MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 QDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 QDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 TSDHHLDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIPPQPRRAAPTTPPPPVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TSDHHLDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIPPQPRRAAPTTPPPPVK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 RRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCSPTPPPVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCSPTPPPVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 RRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEEKAAAEAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 RRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEEKAAAEAA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 VPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVLLSLVEGKDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVLLSLVEGKDLS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 MALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHILTDADPE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 VCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVSSVLPVEL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 ARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVEDGLPLDTT
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 EQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 EQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDPVRIFKHE
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 PQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEYLSLMHAI
              610       620       630       640       650       660

              670       680       690       700       710     
pF1KB4 VRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGEAPS
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGEAPS
              670       680       690       700       710     

>>CCDS2776.1 NCKIPSD gene_id:51517|Hs108|chr3             (722 aa)
 initn: 3645 init1: 3645 opt: 4682  Z-score: 2749.0  bits: 519.2 E(32554): 8.5e-147
Smith-Waterman score: 4682; 99.0% identity (99.0% similar) in 722 aa overlap (1-715:1-722)

               10        20        30        40        50        60
pF1KB4 MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 MYRALYAFRSAEPNALAFAAGETFLVLERSSAHWWLAARARSGETGYVPPAYLRRLQGLE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 QDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 QDVLQAIDRAIEAVHNTAMRDGGKYSLEQRGVLQKLIHHRKETLSRRGPSASSVAVMTSS
               70        80        90       100       110       120

              130       140       150       160              170   
pF1KB4 TSDHHLDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIP-------PQPRRAAPT
       ::::::::::::::::::::::::::::::::::::::::::::       :::::::::
CCDS27 TSDHHLDAAAARQPNGVCRAGFERQHSLPSSEHLGADGGLYQIPLPSSQIPPQPRRAAPT
              130       140       150       160       170       180

           180       190       200       210       220       230   
pF1KB4 TPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 TPPPPVKRRDREALMASGSGGHNTMPSGGNSVSSGSSVSSTSLDTLYTSSSPSEPGSSCS
              190       200       210       220       230       240

           240       250       260       270       280       290   
pF1KB4 PTPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 PTPPPVPRRGTHTTVSQVQPPPSKASAPEPPAEEEVATGTTSASDDLEALGTLSLGTTEE
              250       260       270       280       290       300

           300       310       320       330       340       350   
pF1KB4 KAAAEAAVPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVLLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 KAAAEAAVPRTIGAELMELVRRNTGLSHELCRVAIGIIVGHIQASVPASSPVMEQVLLSL
              310       320       330       340       350       360

           360       370       380       390       400       410   
pF1KB4 VEGKDLSMALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VEGKDLSMALPSGQVCHDQQRLEVIFADLARRKDDAQQRSWALYEDEGVIRCYLEELLHI
              370       380       390       400       410       420

           420       430       440       450       460       470   
pF1KB4 LTDADPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LTDADPEVCKKMCKRNEFESVLALVAYYQMEHRASLRLLLLKCFGAMCSLDAAIISTLVS
              430       440       450       460       470       480

           480       490       500       510       520       530   
pF1KB4 SVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 SVLPVELARDMQTDTQDHQKLCYSALILAMVFSMGEAVPYAHYEHLGTPFAQFLLNIVED
              490       500       510       520       530       540

           540       550       560       570       580       590   
pF1KB4 GLPLDTTEQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 GLPLDTTEQLPDLCVNLLLALNLHLPAADQNVIMAALSKHANVKIFSEKLLLLLNRGDDP
              550       560       570       580       590       600

           600       610       620       630       640       650   
pF1KB4 VRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 VRIFKHEPQPPHSVLKFLQDVFGSPATAAIFYHTDMMALIDITVRHIADLSPGDKLRMEY
              610       620       630       640       650       660

           660       670       680       690       700       710   
pF1KB4 LSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS27 LSLMHAIVRTTPYLQHRHRLPDLQAILRRILNEEETSPQCQMDRMIVREMCKEFLVLGEA
              670       680       690       700       710       720

         
pF1KB4 PS
       ::
CCDS27 PS
         




715 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 21:25:29 2016 done: Thu Nov  3 21:25:30 2016
 Total Scan time:  4.060 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]