Result of FASTA (omim) for
pF1KB4122
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4122, 614 aa
1>>>pF1KB4122 614 - 614 aa - 614 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4998+/-0.000426; mu= 19.2691+/- 0.026
mean_var=92.8795+/-19.115, 0's: 0 Z-trim(112.4): 185 B-trim: 926 in 1/57
Lambda= 0.133080
statistics sampled from 21129 (21370) to 21129 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.607), E-opt: 0.2 (0.251), width: 16
Scan time: 10.570
The best scores are: opt bits E(85289)
NP_004387 (OMIM: 180630) probable ATP-dependent RN ( 614) 4159 809.4 0
NP_001307525 (OMIM: 180630) probable ATP-dependent ( 614) 4159 809.4 0
NP_001307524 (OMIM: 180630) probable ATP-dependent ( 614) 4159 809.4 0
NP_001307526 (OMIM: 180630) probable ATP-dependent ( 614) 4062 790.8 0
NP_001091974 (OMIM: 608469) probable ATP-dependent ( 731) 2676 524.7 4.2e-148
NP_006377 (OMIM: 608469) probable ATP-dependent RN ( 729) 2666 522.8 1.6e-147
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775) 1231 247.3 1.4e-64
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 1231 247.4 1.7e-64
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 1231 247.4 1.7e-64
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938) 1231 247.4 1.7e-64
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938) 1231 247.4 1.7e-64
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529) 1171 235.6 3.2e-61
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529) 1171 235.6 3.2e-61
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648) 1171 235.7 3.7e-61
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604) 1150 231.7 5.8e-60
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439) 1118 225.4 3.2e-58
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674) 1116 225.2 5.8e-58
XP_011541799 (OMIM: 605281) PREDICTED: probable AT ( 678) 1000 202.9 2.9e-51
NP_001136021 (OMIM: 605281) probable ATP-dependent ( 690) 1000 202.9 3e-51
XP_011541797 (OMIM: 605281) PREDICTED: probable AT ( 698) 1000 202.9 3e-51
NP_001160005 (OMIM: 605281) probable ATP-dependent ( 704) 1000 202.9 3e-51
NP_077726 (OMIM: 605281) probable ATP-dependent RN ( 724) 1000 202.9 3.1e-51
NP_001160006 (OMIM: 605281) probable ATP-dependent ( 575) 998 202.5 3.4e-51
XP_016884803 (OMIM: 300160,300958) PREDICTED: ATP- ( 475) 991 201.0 7.5e-51
NP_001180345 (OMIM: 300160,300958) ATP-dependent R ( 661) 992 201.4 8.4e-51
XP_016884802 (OMIM: 300160,300958) PREDICTED: ATP- ( 476) 989 200.7 9.8e-51
NP_001180346 (OMIM: 300160,300958) ATP-dependent R ( 646) 990 201.0 1.1e-50
NP_001347 (OMIM: 300160,300958) ATP-dependent RNA ( 662) 990 201.0 1.1e-50
NP_001289481 (OMIM: 400010,415000) ATP-dependent R ( 657) 973 197.7 1e-49
NP_004651 (OMIM: 400010,415000) ATP-dependent RNA ( 660) 973 197.7 1e-49
NP_001116137 (OMIM: 400010,415000) ATP-dependent R ( 660) 973 197.7 1e-49
XP_011542194 (OMIM: 300160,300958) PREDICTED: ATP- ( 598) 947 192.7 3.1e-48
NP_001311124 (OMIM: 400010,415000) ATP-dependent R ( 637) 850 174.1 1.3e-42
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619) 819 168.1 8e-41
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619) 819 168.1 8e-41
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619) 819 168.1 8e-41
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619) 819 168.1 8e-41
NP_001307110 (OMIM: 174300,615464) probable ATP-de ( 567) 738 152.5 3.6e-36
XP_006711625 (OMIM: 174300,615464) PREDICTED: prob ( 557) 736 152.1 4.6e-36
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455) 726 150.1 1.5e-35
NP_001308661 (OMIM: 608170,616871) probable ATP-de ( 496) 724 149.8 2.1e-35
NP_001308759 (OMIM: 608170,616871) probable ATP-de ( 496) 724 149.8 2.1e-35
NP_001243839 (OMIM: 606357) nucleolar RNA helicase ( 715) 725 150.1 2.4e-35
NP_057306 (OMIM: 608170,616871) probable ATP-depen ( 622) 724 149.9 2.5e-35
NP_004719 (OMIM: 606357) nucleolar RNA helicase 2 ( 783) 725 150.2 2.6e-35
NP_076950 (OMIM: 610373) ATP-dependent RNA helicas ( 737) 696 144.6 1.2e-33
XP_016872115 (OMIM: 610373) PREDICTED: ATP-depende ( 737) 696 144.6 1.2e-33
XP_005270205 (OMIM: 610373) PREDICTED: ATP-depende ( 672) 693 144.0 1.6e-33
XP_016872118 (OMIM: 610373) PREDICTED: ATP-depende ( 672) 693 144.0 1.6e-33
XP_016872116 (OMIM: 610373) PREDICTED: ATP-depende ( 672) 693 144.0 1.6e-33
>>NP_004387 (OMIM: 180630) probable ATP-dependent RNA he (614 aa)
initn: 4159 init1: 4159 opt: 4159 Z-score: 4319.6 bits: 809.4 E(85289): 0
Smith-Waterman score: 4159; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)
10 20 30 40 50 60
pF1KB4 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
550 560 570 580 590 600
610
pF1KB4 APMIGYPMPTGYSQ
::::::::::::::
NP_004 APMIGYPMPTGYSQ
610
>>NP_001307525 (OMIM: 180630) probable ATP-dependent RNA (614 aa)
initn: 4159 init1: 4159 opt: 4159 Z-score: 4319.6 bits: 809.4 E(85289): 0
Smith-Waterman score: 4159; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)
10 20 30 40 50 60
pF1KB4 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
550 560 570 580 590 600
610
pF1KB4 APMIGYPMPTGYSQ
::::::::::::::
NP_001 APMIGYPMPTGYSQ
610
>>NP_001307524 (OMIM: 180630) probable ATP-dependent RNA (614 aa)
initn: 4159 init1: 4159 opt: 4159 Z-score: 4319.6 bits: 809.4 E(85289): 0
Smith-Waterman score: 4159; 100.0% identity (100.0% similar) in 614 aa overlap (1-614:1-614)
10 20 30 40 50 60
pF1KB4 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
550 560 570 580 590 600
610
pF1KB4 APMIGYPMPTGYSQ
::::::::::::::
NP_001 APMIGYPMPTGYSQ
610
>>NP_001307526 (OMIM: 180630) probable ATP-dependent RNA (614 aa)
initn: 4053 init1: 4053 opt: 4062 Z-score: 4219.0 bits: 790.8 E(85289): 0
Smith-Waterman score: 4062; 99.2% identity (99.5% similar) in 606 aa overlap (9-614:9-614)
10 20 30 40 50 60
pF1KB4 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
:.: . :::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKAGRFEADEGTSVRFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLDELPKFEKNFYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDRENYDRGYSSLLKRDFGAKTQNGVYSAANY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGSNVPNMHNGMNQQAYAYPATAA
550 560 570 580 590 600
610
pF1KB4 APMIGYPMPTGYSQ
::::::::::::::
NP_001 APMIGYPMPTGYSQ
610
>>NP_001091974 (OMIM: 608469) probable ATP-dependent RNA (731 aa)
initn: 2426 init1: 2305 opt: 2676 Z-score: 2779.8 bits: 524.7 E(85289): 4.2e-148
Smith-Waterman score: 2721; 67.9% identity (81.1% similar) in 645 aa overlap (3-612:83-717)
10 20 30
pF1KB4 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGK
: .:::: :::: : ::. .: : :
NP_001 VVTRPEPQALPSPAIRAPLPDLYPFGTMRGGGFGDRDRDRDRG-G---FGARGGGGLPPK
60 70 80 90 100
40 50 60 70 80 90
pF1KB4 KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHN-CPK
:::::::.: ::::.:.:::::::::: :::..:: : ::. ::.::::::: . :::
NP_001 KFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPK
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB4 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLP
::. :..:::: ::::. :.::::: :: ::.:.:::: ::::.:::::::::.::::
NP_001 PVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLP
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB4 AIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI
:::::::::.:::::::::::::::::::::::::: .: . :::::::::::::::::
NP_001 AIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQI
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB4 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP
:::::::::::::::::::::: ::::::: :::::::::::::::::::::::::::::
NP_001 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB4 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR
:::::::::::::::::::::::.:: .::.: :::::::::::::::: . :::.:::.
NP_001 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ
350 360 370 380 390 400
340 350 360 370 380 390
pF1KB4 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK
::::::.:::::::.:::::::::.:::.::::::::: ::::::: :::::::::. ::
NP_001 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK
410 420 430 440 450 460
400 410 420 430 440 450
pF1KB4 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK
::::::::::::::::::::::::::::::::::.::::::::::. :::::::::.:.:
NP_001 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK
470 480 490 500 510 520
460 470 480 490
pF1KB4 QVSDLISVLREANQAINPKLLQLVEDRGSGRSRGRGG---------------MKDDRRDR
:. .::.::.::::::::::.:::. ::.: . :.:: : .:. ::
NP_001 QARELIKVLEEANQAINPKLMQLVDHRGGGGGGGKGGRSRYRTTSSANNPNLMYQDECDR
530 540 550 560 570 580
500 510 520 530 540
pF1KB4 YSAG-KRGGFN---TFRDRENYDR-------GYSSLLKRDFGAKTQN-----GVYSAANY
: : :: ..::: . :: ::.: . :::.. . :.:.:: :
NP_001 RLRGVKDGGRRDSASYRDRSETDRAGYANGSGYGSP-NSAFGAQAGQYTYGQGTYGAAAY
590 600 610 620 630 640
550 560 570 580 590
pF1KB4 TNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQY---GSNVPNMHNGMNQQAYAYPA
..:. .. .:: .. ... :.: ... .:.::. : . . . :.:: .: :
NP_001 GTSSYTAQEYGAG---TYGASSTTSTGRSSQSSSQQFSGIGRSGQQPQPLMSQQ-FAQPP
650 660 670 680 690 700
600 610
pF1KB4 TAAAPMIGYPMPTGYSQ
.:. :::: :.:
NP_001 -GATNMIGYMGQTAYQYPPPPPPPPPSRK
710 720 730
>>NP_006377 (OMIM: 608469) probable ATP-dependent RNA he (729 aa)
initn: 2407 init1: 2286 opt: 2666 Z-score: 2769.5 bits: 522.8 E(85289): 1.6e-147
Smith-Waterman score: 2713; 68.3% identity (81.2% similar) in 643 aa overlap (3-612:83-715)
10 20 30
pF1KB4 MSGYSSDRDRGRDRGFGAPRFGGSRAGPLSGK
: .:::: :::: : ::. .: : :
NP_006 VVTRPEPQALPSPAIRAPLPDLYPFGTMRGGGFGDRDRDRDRG-G---FGARGGGGLPPK
60 70 80 90 100
40 50 60 70 80 90
pF1KB4 KFGNPGEKLVKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHN-CPK
:::::::.: ::::.:.:::::::::: :::..:: : ::. ::.::::::: . :::
NP_006 KFGNPGERLRKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPK
110 120 130 140 150 160
100 110 120 130 140 150
pF1KB4 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLP
::. :..:::: ::::. :.::::: :: ::.:.:::: ::::.:::::::::.::::
NP_006 PVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLP
170 180 190 200 210 220
160 170 180 190 200 210
pF1KB4 AIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQI
:::::::::.:::::::::::::::::::::::::: .: . :::::::::::::::::
NP_006 AIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQI
230 240 250 260 270 280
220 230 240 250 260 270
pF1KB4 RDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRP
:::::::::::::::::::::: ::::::: :::::::::::::::::::::::::::::
NP_006 RDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRP
290 300 310 320 330 340
280 290 300 310 320 330
pF1KB4 DRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIR
:::::::::::::::::::::::.:: .::.: :::::::::::::::: . :::.:::.
NP_006 DRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQ
350 360 370 380 390 400
340 350 360 370 380 390
pF1KB4 LMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK
::::::.:::::::.:::::::::.:::.::::::::: ::::::: :::::::::. ::
NP_006 LMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK
410 420 430 440 450 460
400 410 420 430 440 450
pF1KB4 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIK
::::::::::::::::::::::::::::::::::.::::::::::. :::::::::.:.:
NP_006 APILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLK
470 480 490 500 510 520
460 470 480 490
pF1KB4 QVSDLISVLREANQAINPKLLQLVEDRGSG-----RSRGRGG--------MKDDRRDRYS
:. .::.::.::::::::::.:::. ::.: ::: : : .:. ::
NP_006 QARELIKVLEEANQAINPKLMQLVDHRGGGGGGGGRSRYRTTSSANNPNLMYQDECDRRL
530 540 550 560 570 580
500 510 520 530 540
pF1KB4 AG-KRGGFN---TFRDRENYDR-------GYSSLLKRDFGAKTQN-----GVYSAANYTN
: : :: ..::: . :: ::.: . :::.. . :.:.:: : .
NP_006 RGVKDGGRRDSASYRDRSETDRAGYANGSGYGSP-NSAFGAQAGQYTYGQGTYGAAAYGT
590 600 610 620 630 640
550 560 570 580 590
pF1KB4 GSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQY---GSNVPNMHNGMNQQAYAYPATA
.:. .. .:: .. ... :.: ... .:.::. : . . . :.:: .: : .
NP_006 SSYTAQEYGAG---TYGASSTTSTGRSSQSSSQQFSGIGRSGQQPQPLMSQQ-FAQPP-G
650 660 670 680 690 700
600 610
pF1KB4 AAPMIGYPMPTGYSQ
:. :::: :.:
NP_006 ATNMIGYMGQTAYQYPPPPPPPPPSRK
710 720
>>XP_016879601 (OMIM: 613369) PREDICTED: ATP-dependent R (775 aa)
initn: 1147 init1: 790 opt: 1231 Z-score: 1280.1 bits: 247.3 E(85289): 1.4e-64
Smith-Waterman score: 1231; 37.3% identity (67.9% similar) in 585 aa overlap (37-607:29-601)
10 20 30 40 50 60
pF1KB4 DRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLD----ELPKFEKNFYQEH
: .:.. .: . : ::::::.::
XP_016 MAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEH
10 20 30 40 50
70 80 90 100 110 120
pF1KB4 PDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQA
... : :.. :.. .. : : :.: .: . .: ..: : ....:.:: ::
XP_016 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB4 QGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ
:: :::::: ::.:.:.:::::: ... : ..:: : :: ::::: ... ::::: ::
XP_016 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQ
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB4 VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRT
.. .. .: :.:. .:::. : . :..:.:: . ::::::: .. :::.:.
XP_016 IHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI
.:::.::::::.::::: :.:.:....:::::::..:::. :....::.:.: : :..
XP_016 SYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQ
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 GALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKM
: . ::... :::.. :. : . : : . :. : .....:: : .::. ..
XP_016 GDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVEFTS--SGSVLLFVTKKANAEELANNL
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB4 RRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNS
...: .::: .:.::. :...::. :.:.:::::.::::. ..: ::::: .
XP_016 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARD
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB4 SEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL-VEDRGS
. . ::::::.:. . :.:::..::.. . ..::. :. ::: .. .::.: ...
XP_016 IDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWF
420 430 440 450 460 470
490 500 510 520 530
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDR-----ENYDRGYSSLLKRDFGAKTQNGVY
.:: .:: . . . : :: .:.: ::.::: ..... . : ..:..
XP_016 RKSRFKGG----KGKKLNIG--GGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAM
480 490 500 510 520
540 550 560 570 580 590
pF1KB4 SAA-NYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGS--NVPNMHNGMNQQA
. . ...: :.. : . .:. ... .:. : .. . :: .::. .....
XP_016 GDRLTAMKAAFQSQYKSHFVAASL-SNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNS
530 540 550 560 570 580
600 610
pF1KB4 YAYPATAAAPMIGYPMPTGYSQ
:.:.:: : :
XP_016 PDSPVTSAAK--GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREGTGGSNGKRER
590 600 610 620 630 640
>>NP_031398 (OMIM: 613369) ATP-dependent RNA helicase DD (938 aa)
initn: 1147 init1: 790 opt: 1231 Z-score: 1279.1 bits: 247.4 E(85289): 1.7e-64
Smith-Waterman score: 1231; 37.3% identity (67.9% similar) in 585 aa overlap (37-607:192-764)
10 20 30 40 50 60
pF1KB4 DRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLD----ELPKFEKNFYQEH
: .:.. .: . : ::::::.::
NP_031 RYMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEH
170 180 190 200 210 220
70 80 90 100 110 120
pF1KB4 PDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQA
... : :.. :.. .. : : :.: .: . .: ..: : ....:.:: ::
NP_031 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC
230 240 250 260 270 280
130 140 150 160 170 180
pF1KB4 QGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ
:: :::::: ::.:.:.:::::: ... : ..:: : :: ::::: ... ::::: ::
NP_031 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQ
290 300 310 320 330 340
190 200 210 220 230 240
pF1KB4 VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRT
.. .. .: :.:. .:::. : . :..:.:: . ::::::: .. :::.:.
NP_031 IHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV
350 360 370 380 390 400
250 260 270 280 290 300
pF1KB4 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI
.:::.::::::.::::: :.:.:....:::::::..:::. :....::.:.: : :..
NP_031 SYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQ
410 420 430 440 450 460
310 320 330 340 350 360
pF1KB4 GALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKM
: . ::... :::.. :. : . : : . :. : .....:: : .::. ..
NP_031 GDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVEFTS--SGSVLLFVTKKANAEELANNL
470 480 490 500 510
370 380 390 400 410 420
pF1KB4 RRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNS
...: .::: .:.::. :...::. :.:.:::::.::::. ..: ::::: .
NP_031 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARD
520 530 540 550 560 570
430 440 450 460 470 480
pF1KB4 SEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL-VEDRGS
. . ::::::.:. . :.:::..::.. . ..::. :. ::: .. .::.: ...
NP_031 IDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWF
580 590 600 610 620 630
490 500 510 520 530
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDR-----ENYDRGYSSLLKRDFGAKTQNGVY
.:: .:: . . . : :: .:.: ::.::: ..... . : ..:..
NP_031 RKSRFKGG----KGKKLNIG--GGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAM
640 650 660 670 680 690
540 550 560 570 580 590
pF1KB4 SAA-NYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGS--NVPNMHNGMNQQA
. . ...: :.. : . .:. ... .:. : .. . :: .::. .....
NP_031 GDRLTAMKAAFQSQYKSHFVAASL-SNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNS
700 710 720 730 740 750
600 610
pF1KB4 YAYPATAAAPMIGYPMPTGYSQ
:.:.:: : :
NP_031 PDSPVTSAAK--GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREGTGGSNGKRER
760 770 780 790 800
>>XP_006721720 (OMIM: 613369) PREDICTED: ATP-dependent R (938 aa)
initn: 1147 init1: 790 opt: 1231 Z-score: 1279.1 bits: 247.4 E(85289): 1.7e-64
Smith-Waterman score: 1231; 37.3% identity (67.9% similar) in 585 aa overlap (37-607:192-764)
10 20 30 40 50 60
pF1KB4 DRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLD----ELPKFEKNFYQEH
: .:.. .: . : ::::::.::
XP_006 RYMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEH
170 180 190 200 210 220
70 80 90 100 110 120
pF1KB4 PDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQA
... : :.. :.. .. : : :.: .: . .: ..: : ....:.:: ::
XP_006 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC
230 240 250 260 270 280
130 140 150 160 170 180
pF1KB4 QGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ
:: :::::: ::.:.:.:::::: ... : ..:: : :: ::::: ... ::::: ::
XP_006 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQ
290 300 310 320 330 340
190 200 210 220 230 240
pF1KB4 VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRT
.. .. .: :.:. .:::. : . :..:.:: . ::::::: .. :::.:.
XP_006 IHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV
350 360 370 380 390 400
250 260 270 280 290 300
pF1KB4 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI
.:::.::::::.::::: :.:.:....:::::::..:::. :....::.:.: : :..
XP_006 SYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQ
410 420 430 440 450 460
310 320 330 340 350 360
pF1KB4 GALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKM
: . ::... :::.. :. : . : : . :. : .....:: : .::. ..
XP_006 GDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVEFTS--SGSVLLFVTKKANAEELANNL
470 480 490 500 510
370 380 390 400 410 420
pF1KB4 RRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNS
...: .::: .:.::. :...::. :.:.:::::.::::. ..: ::::: .
XP_006 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARD
520 530 540 550 560 570
430 440 450 460 470 480
pF1KB4 SEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL-VEDRGS
. . ::::::.:. . :.:::..::.. . ..::. :. ::: .. .::.: ...
XP_006 IDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWF
580 590 600 610 620 630
490 500 510 520 530
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDR-----ENYDRGYSSLLKRDFGAKTQNGVY
.:: .:: . . . : :: .:.: ::.::: ..... . : ..:..
XP_006 RKSRFKGG----KGKKLNIG--GGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAM
640 650 660 670 680 690
540 550 560 570 580 590
pF1KB4 SAA-NYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGS--NVPNMHNGMNQQA
. . ...: :.. : . .:. ... .:. : .. . :: .::. .....
XP_006 GDRLTAMKAAFQSQYKSHFVAASL-SNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNS
700 710 720 730 740 750
600 610
pF1KB4 YAYPATAAAPMIGYPMPTGYSQ
:.:.:: : :
XP_006 PDSPVTSAAK--GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREGTGGSNGKRER
760 770 780 790 800
>>NP_987095 (OMIM: 613369) ATP-dependent RNA helicase DD (938 aa)
initn: 1147 init1: 790 opt: 1231 Z-score: 1279.1 bits: 247.4 E(85289): 1.7e-64
Smith-Waterman score: 1231; 37.3% identity (67.9% similar) in 585 aa overlap (37-607:192-764)
10 20 30 40 50 60
pF1KB4 DRDRGRDRGFGAPRFGGSRAGPLSGKKFGNPGEKLVKKKWNLD----ELPKFEKNFYQEH
: .:.. .: . : ::::::.::
NP_987 RYMAENPTAGVVQEEEEDNLEYDSDGNPIAPTKKIIDPLPPIDHSEIDYPPFEKNFYNEH
170 180 190 200 210 220
70 80 90 100 110 120
pF1KB4 PDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQA
... : :.. :.. .. : : :.: .: . .: ..: : ....:.:: ::
NP_987 EEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQC
230 240 250 260 270 280
130 140 150 160 170 180
pF1KB4 QGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQ
:: :::::: ::.:.:.:::::: ... : ..:: : :: ::::: ... ::::: ::
NP_987 QGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQ
290 300 310 320 330 340
190 200 210 220 230 240
pF1KB4 VQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRT
.. .. .: :.:. .:::. : . :..:.:: . ::::::: .. :::.:.
NP_987 IHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRV
350 360 370 380 390 400
250 260 270 280 290 300
pF1KB4 TYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI
.:::.::::::.::::: :.:.:....:::::::..:::. :....::.:.: : :..
NP_987 SYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQ
410 420 430 440 450 460
310 320 330 340 350 360
pF1KB4 GALELSANHNILQIVDVCHD-VEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKM
: . ::... :::.. :. : . : : . :. : .....:: : .::. ..
NP_987 GDIG-EANEDVTQIVEILHSGPSKWNWLTRRLVEFTS--SGSVLLFVTKKANAEELANNL
470 480 490 500 510
370 380 390 400 410 420
pF1KB4 RRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNS
...: .::: .:.::. :...::. :.:.:::::.::::. ..: ::::: .
NP_987 KQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARD
520 530 540 550 560 570
430 440 450 460 470 480
pF1KB4 SEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQL-VEDRGS
. . ::::::.:. . :.:::..::.. . ..::. :. ::: .. .::.: ...
NP_987 IDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWF
580 590 600 610 620 630
490 500 510 520 530
pF1KB4 GRSRGRGGMKDDRRDRYSAGKRGGFNTFRDR-----ENYDRGYSSLLKRDFGAKTQNGVY
.:: .:: . . . : :: .:.: ::.::: ..... . : ..:..
NP_987 RKSRFKGG----KGKKLNIG--GGGLGYRERPGLGSENMDRGNNNVMSNYEAYKPSTGAM
640 650 660 670 680 690
540 550 560 570 580 590
pF1KB4 SAA-NYTNGSFGSNFVSAGIQTSFRTGNPTGTYQNGYDSTQQYGS--NVPNMHNGMNQQA
. . ...: :.. : . .:. ... .:. : .. . :: .::. .....
NP_987 GDRLTAMKAAFQSQYKSHFVAASL-SNQKAGSSAAGASGWTSAGSLNSVPTNSAQQGHNS
700 710 720 730 740 750
600 610
pF1KB4 YAYPATAAAPMIGYPMPTGYSQ
:.:.:: : :
NP_987 PDSPVTSAAK--GIPGFGNTGNISGAPVTYPSAGAQGVNNTASGNNSREGTGGSNGKRER
760 770 780 790 800
614 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:26:45 2016 done: Thu Nov 3 14:26:46 2016
Total Scan time: 10.570 Total Display time: 0.160
Function used was FASTA [36.3.4 Apr, 2011]