Result of FASTA (ccds) for
pF1KB4140
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4140, 747 aa
1>>>pF1KB4140 747 - 747 aa - 747 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8070+/-0.000945; mu= 14.5807+/- 0.057
mean_var=136.9833+/-27.141, 0's: 0 Z-trim(110.7): 25 B-trim: 0 in 0/54
Lambda= 0.109582
statistics sampled from 11769 (11788) to 11769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.362), width: 16
Scan time: 3.820
The best scores are: opt bits E(32554)
CCDS1337.1 QSOX1 gene_id:5768|Hs108|chr1 ( 747) 5083 815.6 0
CCDS30950.1 QSOX1 gene_id:5768|Hs108|chr1 ( 604) 4092 658.8 7e-189
CCDS35178.1 QSOX2 gene_id:169714|Hs108|chr9 ( 698) 1601 265.0 2.8e-70
>>CCDS1337.1 QSOX1 gene_id:5768|Hs108|chr1 (747 aa)
initn: 5083 init1: 5083 opt: 5083 Z-score: 4349.9 bits: 815.6 E(32554): 0
Smith-Waterman score: 5083; 99.9% identity (100.0% similar) in 747 aa overlap (1-747:1-747)
10 20 30 40 50 60
pF1KB4 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 ARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS13 ARNNEEYLALIFEKGGSYLGREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 PEASRPPKLHPGLRAAPGQEPPEHMAELQRNEQEQPLGQWHLSKRDTGAALLAESRAEKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEASRPPKLHPGLRAAPGQEPPEHMAELQRNEQEQPLGQWHLSKRDTGAALLAESRAEKN
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 RLWGPLEVRRVGRSSKQLVDIPEGQLEARAGRGRGQWLQVLGGGFSYLDISLCVGLYSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RLWGPLEVRRVGRSSKQLVDIPEGQLEARAGRGRGQWLQVLGGGFSYLDISLCVGLYSLS
670 680 690 700 710 720
730 740
pF1KB4 FMGLLAMYTYFQAKIRALKGHAGHPAA
:::::::::::::::::::::::::::
CCDS13 FMGLLAMYTYFQAKIRALKGHAGHPAA
730 740
>>CCDS30950.1 QSOX1 gene_id:5768|Hs108|chr1 (604 aa)
initn: 4092 init1: 4092 opt: 4092 Z-score: 3504.5 bits: 658.8 E(32554): 7e-189
Smith-Waterman score: 4092; 99.8% identity (100.0% similar) in 602 aa overlap (1-602:1-602)
10 20 30 40 50 60
pF1KB4 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MRRCNSGSGPPPSLLLLLLWLLAVPGANAAPRSALYSPSDPLTLLQADTVRGAVLGSRSA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 WAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VRFFKAFTKNGSGAVFPVAGADVQTLRERLIDALESHHDTWPPACPPLEPAKLEEIDGFF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 ARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
:::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS30 ARNNEEYLALIFEKGGSYLGREVALDLSQHKGVAVRRVLNTEANVVRKFGVTDFPSCYLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 FRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQTTVAPTTANKIAPTVWKLADRSKIY
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MADLESALHYILRIEVGRFPVLEGQRLVALKKFVAVLAKYFPGRPLVQNFLHSVNEWLKR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QKRNKIPYSFFKTALDDRKEGAVLAKKVNWIGCQGSEPHFRGFPCSLWVLFHFLTVQAAR
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QNVDHSQEAAKAKEVLPAIRGYVHYFFGCRDCASHFEQMAAASMHRVGSPNAAVLWLWSS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 HNRVNARLAGAPSEDPQFPKVQWPPRELCSACHNERLDVPVWDVEATLNFLKAHFSPSNI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 ILDFPAAGSAARRDVQNVAAAPELAMGALELESRNSTLDPGKPEMMKSPTNTTPHVPAEG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 PEASRPPKLHPGLRAAPGQEPPEHMAELQRNEQEQPLGQWHLSKRDTGAALLAESRAEKN
::
CCDS30 PELI
>>CCDS35178.1 QSOX2 gene_id:169714|Hs108|chr9 (698 aa)
initn: 1637 init1: 546 opt: 1601 Z-score: 1375.3 bits: 265.0 E(32554): 2.8e-70
Smith-Waterman score: 1610; 38.1% identity (61.6% similar) in 753 aa overlap (8-746:25-697)
10 20 30
pF1KB4 MRRCNSGSGPP-----PSLLLLLLWLLAVPGANAAPRSALYSP
: :: : ::.:: . :::..: : ::
CCDS35 MAAAGAAVARSPGIGAGPALRARRSPPPRAARLPRLLVLLAAAAVGPGAGGAAR--LYRA
10 20 30 40 50
40 50 60 70 80 90
pF1KB4 S-DPLTLLQADTVRGAVLGSRSAWAVEFFASWCGHCIAFAPTWKALAEDVKAWRPALYLA
. : . .:.. .::::. .: .:: :.:..:::::::..::::.::: ::. : :. .:
CCDS35 GEDAVWVLDSGSVRGATANSSAAWLVQFYSSWCGHCIGYAPTWRALAGDVRDWASAIRVA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB4 ALDCAEETNSAVCRDFNIPGFPTVRFFKAFTKN-GSGAVFPVAGADVQTLRERLIDALES
:::: :: :.:::.:..: .:: :.::::::. .: : ...:.:. .:: :..
CCDS35 ALDCMEEKNQAVCHDYDIHFYPTFRYFKAFTKEFTTGENFKGPDRELRTVRQTMIDFLQN
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB4 HHD-TWPPACPPLEPAKLEEIDGFFARNNEEYLALIFEKGGSYLAREVALDLSQHKGVAV
: . . ::::: :.: . .. ... . .:.:..::...:::.::: ::: .....:
CCDS35 HTEGSRPPACPRLDPIQPSDVLSLLDNRGSHYVAIVFESNSSYLGREVILDLIPYESIVV
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB4 RRVLNTEANVVRKFGVTDFPSCYLLFRNGSVSRVPVLMESRSFYTAYLQRLSGLTREAAQ
:.:. . ..:.::.. :::::.. ::: . . :. :.:...::. : . ...
CCDS35 TRALDGDKAFLEKLGVSSVPSCYLIYPNGSHGLINVVKPLRAFFSSYLKSLPDVRKKSLP
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB4 TTVAPTTANKIAPTVWKLADRSKIYMADLESALHYILRIEVGRFPVLEGQRLVALKKFVA
: .. .::. :.::.: .::::.:::.::.:.. : : .: .:: ::.
CCDS35 LPEKPHKEENSEIVVWREFDKSKLYTVDLESGLHYLLRVELAAHKSLAGAELKTLKDFVT
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB4 VLAKYFPGRPLVQNFLHSVNEWLKRQKRNKIPYSFFKTALDD--RKEGAVLAKKVNWIGC
:::: ::::: :...:. ..::: ..:::. ... : : :.....:.::
CCDS35 VLAKLFPGRPPVKKLLEMLQEWLASLPLDRIPYNAVLDLVNNKMRISGIFLTNHIKWVGC
360 370 380 390 400 410
400 410 420 430 440 450
pF1KB4 QGSEPHFRGFPCSLWVLFHFLTVQAARQ--NVDHSQEAAKAKEVLPAIRGYVHYFFGCRD
:::. ..::.::::: ::: :::.:. . . . . :: ..: ::: ::::..
CCDS35 QGSRSELRGYPCSLWKLFHTLTVEASTHPDALVGTGFEDDPQAVLQTMRRYVHTFFGCKE
420 430 440 450 460 470
460 470 480 490 500 510
pF1KB4 CASHFEQMAAASMHRVGSPNAAVLWLWSSHNRVNARLAGAPSEDPQFPKVQWPPRELCSA
:. :::.:: :: : .:. :.::::..:: ::.:::: ::::.:::.::: .:: :
CCDS35 CGEHFEEMAKESMDSVKTPDQAILWLWKKHNMVNGRLAGHLSEDPRFPKLQWPTPDLCPA
480 490 500 510 520 530
520 530 540 550 560 570
pF1KB4 CHNERLDVPVWDVEATLNFLKAHFSPSNIILDFPAAGSAARRDVQNVAAAPELAMGALEL
::.: . :: .:.::: :.. .:.. . : : . . . :: : :
CCDS35 CHEEIKGLASWDEGHVLTFLKQHYGRDNLLDTYSA-------DQGDSSEGGTLARGE-EE
540 550 560 570 580 590
580 590 600 610 620
pF1KB4 ESRNSTLDPGKPEMMKSPTNTTPHVP--AEGPEASRPPKLHPGLRAAPGQEPPEHMAELQ
:.: : : ::. .. .: : : ::. . : .:: .: :. ::
CCDS35 EKR---LTP--PEVSHGDRDTQSVRPPGALGPRPALPESLHHSL---DGK--------LQ
600 610 620 630
630 640 650 660 670 680
pF1KB4 RNEQEQPLGQWHLSKRDTGAALLAESRAEKNRLWGPLEVRRVGRSSKQLVDIPEGQLEAR
: :: ..:: .. :
CCDS35 S-------------------------------LDGPGAHKEVGGAA------P-------
640 650
690 700 710 720 730 740
pF1KB4 AGRGRGQWLQVLGGGFSYLDISLCVGLYSLSFMGLLAMYTYFQAKIRALKGHAGHPAA
:: :: ::.:::: :: : . :..:: .:... : : . :::
CCDS35 ----------FLGVDFSSLDMSLCVVLYVASSLFLMVMYFFFRVRSRRWKVKHHHPAV
660 670 680 690
747 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:27:21 2016 done: Thu Nov 3 21:27:21 2016
Total Scan time: 3.820 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]