Result of FASTA (omim) for
pF1KB4144
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4144, 156 aa
1>>>pF1KB4144 156 - 156 aa - 156 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6305+/-0.000392; mu= 8.3464+/- 0.025
mean_var=158.9921+/-31.303, 0's: 0 Z-trim(118.1): 35 B-trim: 400 in 1/56
Lambda= 0.101715
statistics sampled from 30585 (30620) to 30585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.359), width: 16
Scan time: 5.890
The best scores are: opt bits E(85289)
NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 950 150.2 1.3e-36
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156) 950 150.2 1.3e-36
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156) 950 150.2 1.3e-36
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162) 675 109.8 1.9e-24
NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 675 109.8 1.9e-24
NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 675 109.8 1.9e-24
NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 618 101.5 6.3e-22
NP_001155044 (OMIM: 604877) transcription factor M ( 164) 618 101.5 6.3e-22
NP_001155045 (OMIM: 604877) transcription factor M ( 164) 618 101.5 6.3e-22
NP_001155046 (OMIM: 604877) transcription factor M ( 135) 518 86.7 1.4e-17
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 380 66.8 3.2e-11
NP_963883 (OMIM: 610303) transcription factor MafA ( 353) 346 61.9 1.1e-09
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 343 61.5 1.5e-09
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383) 343 61.5 1.6e-09
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383) 343 61.5 1.6e-09
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383) 343 61.5 1.6e-09
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 343 61.5 1.6e-09
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132) 278 51.5 5.7e-07
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234) 278 51.7 8.3e-07
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237) 276 51.4 1e-06
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237) 276 51.4 1e-06
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237) 276 51.4 1e-06
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 276 51.4 1e-06
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237) 276 51.4 1e-06
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237) 276 51.4 1e-06
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237) 276 51.4 1e-06
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339) 276 51.6 1.3e-06
>>NP_002351 (OMIM: 600197) transcription factor MafK [Ho (156 aa)
initn: 950 init1: 950 opt: 950 Z-score: 778.2 bits: 150.2 E(85289): 1.3e-36
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150
pF1KB4 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
::::::::::::::::::::::::::::::::::::
NP_002 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
130 140 150
>>XP_006715836 (OMIM: 600197) PREDICTED: transcription f (156 aa)
initn: 950 init1: 950 opt: 950 Z-score: 778.2 bits: 150.2 E(85289): 1.3e-36
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150
pF1KB4 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
::::::::::::::::::::::::::::::::::::
XP_006 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
130 140 150
>>XP_005249908 (OMIM: 600197) PREDICTED: transcription f (156 aa)
initn: 950 init1: 950 opt: 950 Z-score: 778.2 bits: 150.2 E(85289): 1.3e-36
Smith-Waterman score: 950; 100.0% identity (100.0% similar) in 156 aa overlap (1-156:1-156)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150
pF1KB4 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
::::::::::::::::::::::::::::::::::::
XP_005 VARGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
130 140 150
>>XP_011521880 (OMIM: 602020) PREDICTED: transcription f (162 aa)
initn: 675 init1: 675 opt: 675 Z-score: 559.9 bits: 109.8 E(85289): 1.9e-24
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-142:1-156)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
::: : :::::::.: :::. :.:.:::.:::::::::::::.:::...:::::::::
XP_011 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
XP_011 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150
pF1KB4 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
:::.::::. :::.:::::::::
XP_011 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
130 140 150 160
>>NP_116100 (OMIM: 602020) transcription factor MafG [Ho (162 aa)
initn: 675 init1: 675 opt: 675 Z-score: 559.9 bits: 109.8 E(85289): 1.9e-24
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-142:1-156)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
::: : :::::::.: :::. :.:.:::.:::::::::::::.:::...:::::::::
NP_116 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
NP_116 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150
pF1KB4 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
:::.::::. :::.:::::::::
NP_116 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
130 140 150 160
>>NP_002350 (OMIM: 602020) transcription factor MafG [Ho (162 aa)
initn: 675 init1: 675 opt: 675 Z-score: 559.9 bits: 109.8 E(85289): 1.9e-24
Smith-Waterman score: 694; 75.0% identity (86.5% similar) in 156 aa overlap (1-142:1-156)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
::: : :::::::.: :::. :.:.:::.:::::::::::::.:::...:::::::::
NP_002 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::::::::::.:..:::::::::: ::.::.:::::::::::::::::::
NP_002 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150
pF1KB4 VARGPVAPS--------------KVATTSVITIVKSTELSSTSVPFSAAS
:::.::::. :::.:::::::::
NP_002 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
130 140 150 160
>>NP_036455 (OMIM: 604877) transcription factor MafF iso (164 aa)
initn: 608 init1: 608 opt: 618 Z-score: 514.7 bits: 101.5 E(85289): 6.3e-22
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
:...: .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
NP_036 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
NP_036 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
70 80 90 100 110 120
130 140 150
pF1KB4 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
:: :::. . :: .::::::::: :..
NP_036 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
130 140 150 160
>>NP_001155044 (OMIM: 604877) transcription factor MafF (164 aa)
initn: 608 init1: 608 opt: 618 Z-score: 514.7 bits: 101.5 E(85289): 6.3e-22
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
:...: .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
NP_001 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
70 80 90 100 110 120
130 140 150
pF1KB4 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
:: :::. . :: .::::::::: :..
NP_001 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
130 140 150 160
>>NP_001155045 (OMIM: 604877) transcription factor MafF (164 aa)
initn: 608 init1: 608 opt: 618 Z-score: 514.7 bits: 101.5 E(85289): 6.3e-22
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
:...: .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
NP_001 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
70 80 90 100 110 120
130 140 150
pF1KB4 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
:: :::. . :: .::::::::: :..
NP_001 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
130 140 150 160
>>NP_001155046 (OMIM: 604877) transcription factor MafF (135 aa)
initn: 508 init1: 508 opt: 518 Z-score: 436.4 bits: 86.7 E(85289): 1.4e-17
Smith-Waterman score: 518; 71.9% identity (89.3% similar) in 121 aa overlap (30-148:1-119)
10 20 30 40 50 60
pF1KB4 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
...::::::.:::::. ::::::::::::::
NP_001 MGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30
70 80 90 100 110 120
pF1KB4 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
40 50 60 70 80 90
130 140 150
pF1KB4 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
:: :::. . :: .::::::::: :..
NP_001 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
100 110 120 130
156 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 21:28:41 2016 done: Thu Nov 3 21:28:42 2016
Total Scan time: 5.890 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]