FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4150, 127 aa
  1>>>pF1KB4150 127 - 127 aa - 127 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3888+/-0.000632; mu= 6.6399+/- 0.039
 mean_var=89.1088+/-17.477, 0's: 0 Z-trim(113.4): 5  B-trim: 0 in 0/51
 Lambda= 0.135867
 statistics sampled from 13996 (13998) to 13996 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.784), E-opt: 0.2 (0.43), width:  16
 Scan time:  1.810

The best scores are:                                      opt bits E(32554)
CCDS3897.1 SUB1 gene_id:10923|Hs108|chr5           ( 127)  823 170.0 3.6e-43


>>CCDS3897.1 SUB1 gene_id:10923|Hs108|chr5                (127 aa)
 initn: 823 init1: 823 opt: 823  Z-score: 888.6  bits: 170.0 E(32554): 3.6e-43
Smith-Waterman score: 823; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)

               10        20        30        40        50        60
pF1KB4 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 DNMFQIGKMRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDI
               70        80        90       100       110       120

              
pF1KB4 DDAVRKL
       :::::::
CCDS38 DDAVRKL
              




127 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:31:51 2016 done: Thu Nov  3 14:31:52 2016
 Total Scan time:  1.810 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]